RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 KCNK1O00180 336 aa15.1■□□□□ 0.01
VPS53-218ENST00000575207 SUSD5O60279 629 aa15.1■□□□□ 0.01
VPS53-218ENST00000575207 TPH1P17752 444 aa15.1■□□□□ 0.01
VPS53-218ENST00000575207 PCK1P35558 622 aa15.1■□□□□ 0.01
VPS53-218ENST00000575207 SF1Q15637 639 aaKnown RBP15.1■□□□□ 0.01
VPS53-218ENST00000575207 CLEC12BQ2HXU8 276 aa15.1■□□□□ 0.01
VPS53-218ENST00000575207 C6orf52Q5T4I8 152 aa15.1■□□□□ 0.01
VPS53-218ENST00000575207 NCBP2-AS2Q69YL0 99 aa15.1■□□□□ 0.01
VPS53-218ENST00000575207 FBXO42Q6P3S6 717 aa15.1■□□□□ 0.01
VPS53-218ENST00000575207 RNF44Q7L0R7 432 aa15.1■□□□□ 0.01
VPS53-218ENST00000575207 MDGA2Q7Z553 956 aa15.1■□□□□ 0.01
VPS53-218ENST00000575207 ARMC10Q8N2F6 343 aa15.1■□□□□ 0.01
VPS53-218ENST00000575207 PPM1NQ8N819 430 aa15.1■□□□□ 0.01
VPS53-218ENST00000575207 LPAR4Q99677 370 aa15.1■□□□□ 0.01
VPS53-218ENST00000575207 VPS37BQ9H9H4 285 aa15.1■□□□□ 0.01
VPS53-218ENST00000575207 DEPPQ9NTK1 212 aa15.1■□□□□ 0.01
VPS53-218ENST00000575207 RWDD2AQ9UIY3 292 aa15.1■□□□□ 0.01
VPS53-218ENST00000575207 PKP3Q9Y446 797 aa15.1■□□□□ 0.01
VPS53-218ENST00000575207 WNK1Q9H4A3 2382 aa15.1■□□□□ 0.01
VPS53-218ENST00000575207 ARHGEF33A8MVX0 844 aa15.09■□□□□ 0.01
VPS53-218ENST00000575207 SIAH2O43255 324 aa15.09■□□□□ 0.01
VPS53-218ENST00000575207 BUD23O43709 281 aaKnown RBP15.09■□□□□ 0.01
VPS53-218ENST00000575207 ERVK-10P10266 1014 aa15.09■□□□□ 0.01
VPS53-218ENST00000575207 RARAP10276 462 aa15.09■□□□□ 0.01
VPS53-218ENST00000575207 PRKCSHP14314 528 aaPredicted RBP15.09■□□□□ 0.01
VPS53-218ENST00000575207 TCF4P15884 667 aa15.09■□□□□ 0.01
VPS53-218ENST00000575207 CD9P21926 228 aa15.09■□□□□ 0.01
VPS53-218ENST00000575207 ATP5J2P56134 94 aa15.09■□□□□ 0.01
VPS53-218ENST00000575207 SLC26A5P58743 744 aa15.09■□□□□ 0.01
VPS53-218ENST00000575207 IFI35P80217 286 aaPredicted RBP15.09■□□□□ 0.01
VPS53-218ENST00000575207 MAT1AQ00266 395 aaKnown RBP15.09■□□□□ 0.01
VPS53-218ENST00000575207 ZBTB17Q13105 803 aa15.09■□□□□ 0.01
VPS53-218ENST00000575207 VEZF1Q14119 521 aa15.09■□□□□ 0.01
VPS53-218ENST00000575207 USP10Q14694 798 aaKnown RBP15.09■□□□□ 0.01
VPS53-218ENST00000575207 CCDC183Q5T5S1 534 aa15.09■□□□□ 0.01
VPS53-218ENST00000575207 LIPNQ5VXI9 398 aa15.09■□□□□ 0.01
VPS53-218ENST00000575207 OTOAQ7RTW8 1153 aa15.09■□□□□ 0.01
VPS53-218ENST00000575207 CCNYQ8ND76 341 aa15.09■□□□□ 0.01
VPS53-218ENST00000575207 TNIP2Q8NFZ5 429 aa15.09■□□□□ 0.01
VPS53-218ENST00000575207 SLC25A51Q9H1U9 297 aa15.09■□□□□ 0.01
VPS53-218ENST00000575207 HACD3Q9P035 362 aa15.09■□□□□ 0.01
VPS53-218ENST00000575207 FREM1Q5H8C1 2179 aa15.08■□□□□ 0.01
VPS53-218ENST00000575207 PINLYPA6NC86 204 aa15.08■□□□□ 0
VPS53-218ENST00000575207 TMCC2O75069 709 aa15.08■□□□□ 0
VPS53-218ENST00000575207 GLSO94925 669 aaPredicted RBP15.08■□□□□ 0
VPS53-218ENST00000575207 GSTM1P09488 218 aa15.08■□□□□ 0
VPS53-218ENST00000575207 TIMP3P35625 211 aa15.08■□□□□ 0
VPS53-218ENST00000575207 ZNF136P52737 540 aa15.08■□□□□ 0
VPS53-218ENST00000575207 JAM2P57087 298 aa15.08■□□□□ 0
VPS53-218ENST00000575207 GSTM4Q03013 218 aa15.08■□□□□ 0
VPS53-218ENST00000575207 MINDY4Q4G0A6 757 aa15.08■□□□□ 0
VPS53-218ENST00000575207 CCDC38Q502W7 563 aa15.08■□□□□ 0
VPS53-218ENST00000575207 GARNL3Q5VVW2 1013 aa15.08■□□□□ 0
VPS53-218ENST00000575207 GLT6D1Q7Z4J2 308 aa15.08■□□□□ 0
VPS53-218ENST00000575207 SLC22A16Q86VW1 577 aa15.08■□□□□ 0
VPS53-218ENST00000575207 CYP4Z2PQ8N1L4 340 aa15.08■□□□□ 0
VPS53-218ENST00000575207 ARHGEF39Q8N4T4 335 aa15.08■□□□□ 0
VPS53-218ENST00000575207 HEXDCQ8WVB3 486 aa15.08■□□□□ 0
VPS53-218ENST00000575207 TIGD1Q96MW7 591 aa15.08■□□□□ 0
VPS53-218ENST00000575207 TTTY12Q9BZ98 90 aa15.08■□□□□ 0
VPS53-218ENST00000575207 FEZF1A0PJY2 475 aa15.07■□□□□ 0
VPS53-218ENST00000575207 DEFB108AA8MXU0 73 aa15.07■□□□□ 0
VPS53-218ENST00000575207 CFAP99D6REC4 459 aa15.07■□□□□ 0
VPS53-218ENST00000575207 PES1O00541 588 aaKnown RBP15.07■□□□□ 0
VPS53-218ENST00000575207 FCHO1O14526 889 aa15.07■□□□□ 0
VPS53-218ENST00000575207 SLC16A5O15375 505 aa15.07■□□□□ 0
VPS53-218ENST00000575207 NRP2O60462 931 aa15.07■□□□□ 0
VPS53-218ENST00000575207 SRP72O76094 671 aaKnown RBP15.07■□□□□ 0
VPS53-218ENST00000575207 TUBB4AP04350 444 aa15.07■□□□□ 0
VPS53-218ENST00000575207 MAN2A2P49641 1150 aa15.07■□□□□ 0
VPS53-218ENST00000575207 PLGLB1Q02325 96 aa15.07■□□□□ 0
VPS53-218ENST00000575207 MMRN1Q13201 1228 aa15.07■□□□□ 0
VPS53-218ENST00000575207 PTK6Q13882 451 aa15.07■□□□□ 0
VPS53-218ENST00000575207 KRT81Q14533 505 aa15.07■□□□□ 0
VPS53-218ENST00000575207 NOMO1Q15155 1222 aa15.07■□□□□ 0
VPS53-218ENST00000575207 PDCD2Q16342 344 aaPredicted RBP15.07■□□□□ 0
VPS53-218ENST00000575207 FAM174BQ3ZCQ3 159 aa15.07■□□□□ 0
VPS53-218ENST00000575207 SFT2D3Q587I9 215 aa15.07■□□□□ 0
VPS53-218ENST00000575207 KIF2BQ8N4N8 673 aa15.07■□□□□ 0
VPS53-218ENST00000575207 C2orf73Q8N5S3 287 aaPredicted RBP15.07■□□□□ 0
VPS53-218ENST00000575207 LMNTD1Q8N9Z9 388 aa15.07■□□□□ 0
VPS53-218ENST00000575207 SPATA13Q96N96 652 aa15.07■□□□□ 0
VPS53-218ENST00000575207 COPS8Q99627 209 aa15.07■□□□□ 0
VPS53-218ENST00000575207 GANQ9H2C0 597 aa15.07■□□□□ 0
VPS53-218ENST00000575207 C6orf203Q9P0P8 240 aaPredicted RBP15.07■□□□□ 0
VPS53-218ENST00000575207 RUVBL1Q9Y265 456 aaKnown RBP15.07■□□□□ 0
VPS53-218ENST00000575207 KIAA1549Q9HCM3 1950 aa15.07■□□□□ 0
VPS53-218ENST00000575207 A0A0A6YYC8 382 aaPredicted RBP15.06■□□□□ 0
VPS53-218ENST00000575207 LOC285095A0A1B0GVY8 99 aa15.06■□□□□ 0
VPS53-218ENST00000575207 H0YGG7 62 aa15.06■□□□□ 0
VPS53-218ENST00000575207 I3L1I5 382 aaPredicted RBP15.06■□□□□ 0
VPS53-218ENST00000575207 LIN7AO14910 233 aaPredicted RBP15.06■□□□□ 0
VPS53-218ENST00000575207 ARF3P61204 181 aaPredicted RBP15.06■□□□□ 0
VPS53-218ENST00000575207 POLR2FP61218 127 aaKnown RBP15.06■□□□□ 0
VPS53-218ENST00000575207 ACTN3Q08043 901 aaPredicted RBP15.06■□□□□ 0
VPS53-218ENST00000575207 ETFDHQ16134 617 aa15.06■□□□□ 0
VPS53-218ENST00000575207 FAM182AQ5T1J6 154 aa15.06■□□□□ 0
VPS53-218ENST00000575207 NDUFAF5Q5TEU4 345 aa15.06■□□□□ 0
VPS53-218ENST00000575207 LRRC8BQ6P9F7 803 aa15.06■□□□□ 0
VPS53-218ENST00000575207 PLEKHM3Q6ZWE6 761 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms