RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 CA5AP35218 305 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 FCGRTP55899 365 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 CD47Q08722 323 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 AAK1Q2M2I8 961 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 TMEM44Q2T9K0 475 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 AARDQ4LEZ3 155 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 UBXN11Q5T124 520 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 SLC25A25Q6KCM7 469 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 SYVN1Q86TM6 617 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 DPP10Q8N608 796 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 ZNF555Q8NEP9 628 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 RNF34Q969K3 372 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 RNF157Q96PX1 679 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 TRMOQ9BU70 441 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 RNF39Q9H2S5 420 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 CARS2Q9HA77 564 aaKnown RBP10.53□□□□□ -0.72
CLK3-226ENST00000569406 IL1RAPQ9NPH3 570 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 GPN3Q9UHW5 284 aaPredicted RBP10.53□□□□□ -0.72
CLK3-226ENST00000569406 HCN2Q9UL51 889 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 NDUFAF1Q9Y375 327 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 TCRBV16S1A1N1A0A5B0 115 aa10.52□□□□□ -0.72
CLK3-226ENST00000569406 HMX2A2RU54 273 aa10.52□□□□□ -0.72
CLK3-226ENST00000569406 DNASE2O00115 360 aaPredicted RBP10.52□□□□□ -0.72
CLK3-226ENST00000569406 MBP02144 154 aa10.52□□□□□ -0.72
CLK3-226ENST00000569406 C7P10643 843 aa10.52□□□□□ -0.72
CLK3-226ENST00000569406 THRBP10828 461 aa10.52□□□□□ -0.72
CLK3-226ENST00000569406 MPSTP25325 297 aa10.52□□□□□ -0.72
CLK3-226ENST00000569406 LIPAP38571 399 aa10.52□□□□□ -0.72
CLK3-226ENST00000569406 MAGEA6P43360 314 aa10.52□□□□□ -0.72
CLK3-226ENST00000569406 PON3Q15166 354 aa10.52□□□□□ -0.72
CLK3-226ENST00000569406 SOWAHCQ53LP3 525 aaPredicted RBP10.52□□□□□ -0.72
CLK3-226ENST00000569406 TIGD3Q6B0B8 471 aa10.52□□□□□ -0.72
CLK3-226ENST00000569406 FUT10Q6P4F1 479 aa10.52□□□□□ -0.72
CLK3-226ENST00000569406 ACOT1Q86TX2 421 aa10.52□□□□□ -0.72
CLK3-226ENST00000569406 DTD1Q8TEA8 209 aa10.52□□□□□ -0.72
CLK3-226ENST00000569406 YIPF6Q96EC8 236 aa10.52□□□□□ -0.72
CLK3-226ENST00000569406 Q96MT0 163 aa10.52□□□□□ -0.72
CLK3-226ENST00000569406 SDHCQ99643 169 aaPredicted RBP10.52□□□□□ -0.72
CLK3-226ENST00000569406 DHX35Q9H5Z1 703 aaKnown RBP10.52□□□□□ -0.72
CLK3-226ENST00000569406 ZBTB26Q9HCK0 441 aa10.52□□□□□ -0.72
CLK3-226ENST00000569406 MUTYHQ9UIF7 546 aa10.52□□□□□ -0.72
CLK3-226ENST00000569406 INTS6Q9UL03 887 aaKnown RBP10.52□□□□□ -0.72
CLK3-226ENST00000569406 ING4Q9UNL4 249 aa10.52□□□□□ -0.72
CLK3-226ENST00000569406 ALG5Q9Y673 324 aa10.52□□□□□ -0.72
CLK3-226ENST00000569406 KRBOX1C9JBD0 128 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 PIRO00625 290 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 ABCD4O14678 606 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 CDC123O75794 336 aaPredicted RBP10.52□□□□□ -0.73
CLK3-226ENST00000569406 GNG10P50151 68 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 CDH13P55290 713 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 SPCS3P61009 180 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 BAK1Q16611 211 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 GOLGA7BQ2TAP0 167 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 CTU2Q2VPK5 515 aaKnown RBP10.52□□□□□ -0.73
CLK3-226ENST00000569406 SPDYE7PQ495Y7 208 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 SCIMPQ6UWF3 145 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 ZZZ3Q8IYH5 903 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 CNTD1Q8N815 330 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 BLOC1S5Q8TDH9 187 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 ASB15Q8WXK1 588 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 GSX2Q9BZM3 304 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 RIMS4Q9H426 269 aaPredicted RBP10.52□□□□□ -0.73
CLK3-226ENST00000569406 RNF167Q9H6Y7 350 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 ANAPC2Q9UJX6 822 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 USP22Q9UPT9 525 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 CLCA3PQ9Y6N3 262 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 I6L893 689 aaPredicted RBP10.52□□□□□ -0.73
CLK3-226ENST00000569406 STX16O14662 325 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 PLIN3O60664 434 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 SRP72O76094 671 aaKnown RBP10.52□□□□□ -0.73
CLK3-226ENST00000569406 GUCA1CO95843 209 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 FHP07954 510 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 SMIM6P0DI80 62 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 FCGR1AP12314 374 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 PRF1P14222 555 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 HNRNPLP14866 589 aaKnown RBP eCLIP10.52□□□□□ -0.73
CLK3-226ENST00000569406 GPD1P21695 349 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 IL5RAQ01344 420 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 KIAA0319Q5VV43 1072 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 C12orf45Q8N5I9 185 aaPredicted RBP10.52□□□□□ -0.73
CLK3-226ENST00000569406 CNIH3Q8TBE1 160 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 TRMT10AQ8TBZ6 339 aaKnown RBP10.52□□□□□ -0.73
CLK3-226ENST00000569406 COQ8BQ96D53 544 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 KIF12Q96FN5 646 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 TREX2Q9BQ50 279 aaPredicted RBP10.52□□□□□ -0.73
CLK3-226ENST00000569406 CCDC32Q9BV29 185 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 FRMD8P1Q9BZ68 369 aaPredicted RBP10.52□□□□□ -0.73
CLK3-226ENST00000569406 PIGUQ9H490 435 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 FAM124BQ9H5Z6 455 aaPredicted RBP10.52□□□□□ -0.73
CLK3-226ENST00000569406 CRTAC1Q9NQ79 661 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 C14orf105Q9NVL8 296 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 PCDHGC4Q9Y5F7 938 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 PCDHGA6Q9Y5G7 932 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 PCDHGA5Q9Y5G8 931 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 PCDHGA1Q9Y5H4 931 aa10.52□□□□□ -0.73
CLK3-226ENST00000569406 TXNL1O43396 289 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 F2P00734 622 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 IGHV2-70P01814 119 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 CSH1P0DML2 217 aa10.51□□□□□ -0.73
CLK3-226ENST00000569406 CSH2P0DML3 217 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms