RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 P2RX6O15547 441 aa15.26■□□□□ 0.03
CLN3-229ENST00000567963 SERPINA7P05543 415 aa15.26■□□□□ 0.03
CLN3-229ENST00000567963 EDN3P14138 238 aa15.26■□□□□ 0.03
CLN3-229ENST00000567963 FDXRP22570 491 aa15.26■□□□□ 0.03
CLN3-229ENST00000567963 COL8A1P27658 744 aa15.26■□□□□ 0.03
CLN3-229ENST00000567963 EEF1A2Q05639 463 aaKnown RBP15.26■□□□□ 0.03
CLN3-229ENST00000567963 SYT16Q17RD7 645 aa15.26■□□□□ 0.03
CLN3-229ENST00000567963 FAAH2Q6GMR7 532 aa15.26■□□□□ 0.03
CLN3-229ENST00000567963 PLD3Q8IV08 490 aa15.26■□□□□ 0.03
CLN3-229ENST00000567963 CPNE9Q8IYJ1 553 aa15.26■□□□□ 0.03
CLN3-229ENST00000567963 OR1N1Q8NGS0 311 aa15.26■□□□□ 0.03
CLN3-229ENST00000567963 BRIX1Q8TDN6 353 aaKnown RBP15.26■□□□□ 0.03
CLN3-229ENST00000567963 AARSD1Q9BTE6 412 aaKnown RBP15.26■□□□□ 0.03
CLN3-229ENST00000567963 TMEM184CQ9NVA4 438 aa15.26■□□□□ 0.03
CLN3-229ENST00000567963 PTGFRNQ9P2B2 879 aa15.26■□□□□ 0.03
CLN3-229ENST00000567963 LOC102723996A0A087X1L8 192 aa15.25■□□□□ 0.03
CLN3-229ENST00000567963 DYTNA2CJ06 578 aa15.25■□□□□ 0.03
CLN3-229ENST00000567963 EIF3FO00303 357 aaPredicted RBP15.25■□□□□ 0.03
CLN3-229ENST00000567963 E2F3O00716 465 aa15.25■□□□□ 0.03
CLN3-229ENST00000567963 NRDCO43847 1150 aa15.25■□□□□ 0.03
CLN3-229ENST00000567963 HRH2P25021 359 aa15.25■□□□□ 0.03
CLN3-229ENST00000567963 SOX11P35716 441 aa15.25■□□□□ 0.03
CLN3-229ENST00000567963 SNRPNP63162 240 aaKnown RBP15.25■□□□□ 0.03
CLN3-229ENST00000567963 ARG2P78540 354 aa15.25■□□□□ 0.03
CLN3-229ENST00000567963 MPP1Q00013 466 aa15.25■□□□□ 0.03
CLN3-229ENST00000567963 NDUFA9Q16795 377 aa15.25■□□□□ 0.03
CLN3-229ENST00000567963 HSP90AA5PQ58FG0 334 aa15.25■□□□□ 0.03
CLN3-229ENST00000567963 TMEM205Q6UW68 189 aa15.25■□□□□ 0.03
CLN3-229ENST00000567963 RIPOR1Q6ZS17 1223 aa15.25■□□□□ 0.03
CLN3-229ENST00000567963 PIWIL4Q7Z3Z4 852 aaKnown RBP15.25■□□□□ 0.03
CLN3-229ENST00000567963 LURAP1LQ8IV03 231 aa15.25■□□□□ 0.03
CLN3-229ENST00000567963 SERBP1Q8NC51 408 aaKnown RBP eCLIP15.25■□□□□ 0.03
CLN3-229ENST00000567963 HAS2Q92819 552 aa15.25■□□□□ 0.03
CLN3-229ENST00000567963 MKL2Q9ULH7 1088 aa15.25■□□□□ 0.03
CLN3-229ENST00000567963 MRPS2Q9Y399 296 aaKnown RBP15.25■□□□□ 0.03
CLN3-229ENST00000567963 KCNE1BA0A087WTH5 132 aa15.24■□□□□ 0.03
CLN3-229ENST00000567963 PGRMC1O00264 195 aaKnown RBP15.24■□□□□ 0.03
CLN3-229ENST00000567963 BMP10O95393 424 aa15.24■□□□□ 0.03
CLN3-229ENST00000567963 AVPR1BP47901 424 aa15.24■□□□□ 0.03
CLN3-229ENST00000567963 EFNA3P52797 238 aa15.24■□□□□ 0.03
CLN3-229ENST00000567963 MAT1AQ00266 395 aaKnown RBP15.24■□□□□ 0.03
CLN3-229ENST00000567963 TIAL1Q01085 375 aaKnown RBP eCLIP15.24■□□□□ 0.03
CLN3-229ENST00000567963 UGT3A1Q6NUS8 523 aa15.24■□□□□ 0.03
CLN3-229ENST00000567963 FAM180AQ6UWF9 173 aa15.24■□□□□ 0.03
CLN3-229ENST00000567963 ZC3H7AQ8IWR0 971 aaKnown RBP15.24■□□□□ 0.03
CLN3-229ENST00000567963 PPIL6Q8IXY8 311 aa15.24■□□□□ 0.03
CLN3-229ENST00000567963 SIRT6Q8N6T7 355 aa15.24■□□□□ 0.03
CLN3-229ENST00000567963 MCOLN3Q8TDD5 553 aa15.24■□□□□ 0.03
CLN3-229ENST00000567963 GRK7Q8WTQ7 553 aa15.24■□□□□ 0.03
CLN3-229ENST00000567963 EEF1AKMT1Q8WVE0 214 aa15.24■□□□□ 0.03
CLN3-229ENST00000567963 CCDC138Q96M89 665 aa15.24■□□□□ 0.03
CLN3-229ENST00000567963 SLX1AQ9BQ83 275 aa15.24■□□□□ 0.03
CLN3-229ENST00000567963 FAM167BQ9BTA0 163 aa15.24■□□□□ 0.03
CLN3-229ENST00000567963 ZNF700Q9H0M5 742 aa15.24■□□□□ 0.03
CLN3-229ENST00000567963 CCDC177Q9NQR7 707 aaPredicted RBP15.24■□□□□ 0.03
CLN3-229ENST00000567963 IARS2Q9NSE4 1012 aaKnown RBP15.24■□□□□ 0.03
CLN3-229ENST00000567963 RIC8BQ9NVN3 520 aa15.24■□□□□ 0.03
CLN3-229ENST00000567963 PLA2G3Q9NZ20 509 aa15.24■□□□□ 0.03
CLN3-229ENST00000567963 ZGRF1Q86YA3 2104 aa15.24■□□□□ 0.03
CLN3-229ENST00000567963 H0YIG0 161 aa15.23■□□□□ 0.03
CLN3-229ENST00000567963 LRRTM2O43300 516 aa15.23■□□□□ 0.03
CLN3-229ENST00000567963 WFS1O76024 890 aa15.23■□□□□ 0.03
CLN3-229ENST00000567963 CELA2AP08217 269 aa15.23■□□□□ 0.03
CLN3-229ENST00000567963 ICAM2P13598 275 aa15.23■□□□□ 0.03
CLN3-229ENST00000567963 TNFSF10P50591 281 aa15.23■□□□□ 0.03
CLN3-229ENST00000567963 RPS15AP62244 130 aaKnown RBP15.23■□□□□ 0.03
CLN3-229ENST00000567963 TBPL1P62380 186 aa15.23■□□□□ 0.03
CLN3-229ENST00000567963 PTK6Q13882 451 aa15.23■□□□□ 0.03
CLN3-229ENST00000567963 PCOLCEQ15113 449 aa15.23■□□□□ 0.03
CLN3-229ENST00000567963 ZNF787Q6DD87 383 aa15.23■□□□□ 0.03
CLN3-229ENST00000567963 LRRC8EQ6NSJ5 796 aa15.23■□□□□ 0.03
CLN3-229ENST00000567963 VN1R4Q7Z5H5 301 aa15.23■□□□□ 0.03
CLN3-229ENST00000567963 BCORP1Q8N888 145 aa15.23■□□□□ 0.03
CLN3-229ENST00000567963 C2CD4AQ8NCU7 369 aaPredicted RBP15.23■□□□□ 0.03
CLN3-229ENST00000567963 OR9A4Q8NGU2 314 aa15.23■□□□□ 0.03
CLN3-229ENST00000567963 ACTRT1Q8TDG2 376 aa15.23■□□□□ 0.03
CLN3-229ENST00000567963 OLAHQ9NV23 265 aa15.23■□□□□ 0.03
CLN3-229ENST00000567963 TRMT6Q9UJA5 497 aaKnown RBP15.23■□□□□ 0.03
CLN3-229ENST00000567963 ADAMTS6Q9UKP5 1117 aa15.23■□□□□ 0.03
CLN3-229ENST00000567963 PDE10AQ9Y233 779 aa15.23■□□□□ 0.03
CLN3-229ENST00000567963 OSGIN2Q9Y236 505 aa15.23■□□□□ 0.03
CLN3-229ENST00000567963 CACNA1DQ01668 2161 aa15.23■□□□□ 0.03
CLN3-229ENST00000567963 TRAV17A0A0B4J275 112 aa15.22■□□□□ 0.03
CLN3-229ENST00000567963 NSA2O95478 260 aaKnown RBP15.22■□□□□ 0.03
CLN3-229ENST00000567963 STATHP02808 62 aa15.22■□□□□ 0.03
CLN3-229ENST00000567963 C8GP07360 202 aa15.22■□□□□ 0.03
CLN3-229ENST00000567963 ITGAMP11215 1152 aa15.22■□□□□ 0.03
CLN3-229ENST00000567963 PGAM1P18669 254 aa15.22■□□□□ 0.03
CLN3-229ENST00000567963 DCTP40126 519 aa15.22■□□□□ 0.03
CLN3-229ENST00000567963 FNTAP49354 379 aa15.22■□□□□ 0.03
CLN3-229ENST00000567963 AP2B1P63010 937 aa15.22■□□□□ 0.03
CLN3-229ENST00000567963 RNASEH2BQ5TBB1 312 aaKnown RBP15.22■□□□□ 0.03
CLN3-229ENST00000567963 ZNF324BQ6AW86 544 aaPredicted RBP15.22■□□□□ 0.03
CLN3-229ENST00000567963 AMER2Q8N7J2 671 aa15.22■□□□□ 0.03
CLN3-229ENST00000567963 TM4SF19Q96DZ7 209 aa15.22■□□□□ 0.03
CLN3-229ENST00000567963 IMMP1LQ96LU5 166 aa15.22■□□□□ 0.03
CLN3-229ENST00000567963 OSBPL9Q96SU4 736 aa15.22■□□□□ 0.03
CLN3-229ENST00000567963 NDNQ99608 321 aa15.22■□□□□ 0.03
CLN3-229ENST00000567963 TUBB6Q9BUF5 446 aa15.22■□□□□ 0.03
CLN3-229ENST00000567963 VN1R1Q9GZP7 353 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms