RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 MAGP20916 626 aa12.89□□□□□ -0.35
CLK3-218ENST00000566926 AGXTP21549 392 aa12.89□□□□□ -0.35
CLK3-218ENST00000566926 CMPK1P30085 196 aa12.89□□□□□ -0.35
CLK3-218ENST00000566926 PNLIPRP1P54315 467 aa12.89□□□□□ -0.35
CLK3-218ENST00000566926 ZIC1Q15915 447 aa12.89□□□□□ -0.35
CLK3-218ENST00000566926 CCSMST1Q4G0I0 132 aa12.89□□□□□ -0.35
CLK3-218ENST00000566926 FIGLAQ6QHK4 219 aa12.89□□□□□ -0.35
CLK3-218ENST00000566926 CYHR1Q6ZMK1 362 aa12.89□□□□□ -0.35
CLK3-218ENST00000566926 UBE2R2Q712K3 238 aaPredicted RBP12.89□□□□□ -0.35
CLK3-218ENST00000566926 SLC22A9Q8IVM8 553 aa12.89□□□□□ -0.35
CLK3-218ENST00000566926 DSELQ8IZU8 1212 aa12.89□□□□□ -0.35
CLK3-218ENST00000566926 DNAJC22Q8N4W6 341 aa12.89□□□□□ -0.35
CLK3-218ENST00000566926 MCOLN3Q8TDD5 553 aa12.89□□□□□ -0.35
CLK3-218ENST00000566926 MR1Q95460 341 aa12.89□□□□□ -0.35
CLK3-218ENST00000566926 KIAA1191Q96A73 305 aa12.89□□□□□ -0.35
CLK3-218ENST00000566926 NXNL1Q96CM4 212 aa12.89□□□□□ -0.35
CLK3-218ENST00000566926 C17orf62Q9BQA9 187 aa12.89□□□□□ -0.35
CLK3-218ENST00000566926 MANSC1Q9H8J5 431 aa12.89□□□□□ -0.35
CLK3-218ENST00000566926 FAM60AQ9NP50 221 aa12.89□□□□□ -0.35
CLK3-218ENST00000566926 MLXIPLQ9NP71 852 aa12.89□□□□□ -0.35
CLK3-218ENST00000566926 IRAK4Q9NWZ3 460 aa12.89□□□□□ -0.35
CLK3-218ENST00000566926 SRPK3Q9UPE1 567 aa12.89□□□□□ -0.35
CLK3-218ENST00000566926 SLC16A5O15375 505 aa12.88□□□□□ -0.35
CLK3-218ENST00000566926 ZNF749O43361 778 aa12.88□□□□□ -0.35
CLK3-218ENST00000566926 SMIM24O75264 130 aa12.88□□□□□ -0.35
CLK3-218ENST00000566926 CD63P08962 238 aa12.88□□□□□ -0.35
CLK3-218ENST00000566926 HIST1H2AGP0C0S8 130 aaPredicted RBP12.88□□□□□ -0.35
CLK3-218ENST00000566926 TFEBP19484 476 aa12.88□□□□□ -0.35
CLK3-218ENST00000566926 HIST1H2ADP20671 130 aa12.88□□□□□ -0.35
CLK3-218ENST00000566926 ATP5F1P24539 256 aaPredicted RBP12.88□□□□□ -0.35
CLK3-218ENST00000566926 SERPINB5P36952 375 aa12.88□□□□□ -0.35
CLK3-218ENST00000566926 GABRA4P48169 554 aa12.88□□□□□ -0.35
CLK3-218ENST00000566926 NFKB2Q00653 900 aa12.88□□□□□ -0.35
CLK3-218ENST00000566926 CDC20Q12834 499 aa12.88□□□□□ -0.35
CLK3-218ENST00000566926 SP140Q13342 867 aa12.88□□□□□ -0.35
CLK3-218ENST00000566926 TECRLQ5HYJ1 363 aa12.88□□□□□ -0.35
CLK3-218ENST00000566926 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.88□□□□□ -0.35
CLK3-218ENST00000566926 TCTE1Q5JU00 501 aa12.88□□□□□ -0.35
CLK3-218ENST00000566926 ISCA2Q86U28 154 aa12.88□□□□□ -0.35
CLK3-218ENST00000566926 SYTL1Q8IYJ3 562 aa12.88□□□□□ -0.35
CLK3-218ENST00000566926 KIRREL3Q8IZU9 778 aa12.88□□□□□ -0.35
CLK3-218ENST00000566926 OR2L3Q8NG85 312 aa12.88□□□□□ -0.35
CLK3-218ENST00000566926 OR2A1Q8NGT9 310 aa12.88□□□□□ -0.35
CLK3-218ENST00000566926 PPP1R14CQ8TAE6 165 aa12.88□□□□□ -0.35
CLK3-218ENST00000566926 CT55Q8WUE5 264 aa12.88□□□□□ -0.35
CLK3-218ENST00000566926 EEF1AKMT1Q8WVE0 214 aa12.88□□□□□ -0.35
CLK3-218ENST00000566926 DLG3Q92796 817 aa12.88□□□□□ -0.35
CLK3-218ENST00000566926 LINGO1Q96FE5 620 aa12.88□□□□□ -0.35
CLK3-218ENST00000566926 HIST1H2AHQ96KK5 128 aa12.88□□□□□ -0.35
CLK3-218ENST00000566926 ZNF317Q96PQ6 595 aaPredicted RBP12.88□□□□□ -0.35
CLK3-218ENST00000566926 PKP4Q99569 1192 aa12.88□□□□□ -0.35
CLK3-218ENST00000566926 HIST1H2AJQ99878 128 aa12.88□□□□□ -0.35
CLK3-218ENST00000566926 H2AFJQ9BTM1 129 aa12.88□□□□□ -0.35
CLK3-218ENST00000566926 TRIM54Q9BYV2 358 aa12.88□□□□□ -0.35
CLK3-218ENST00000566926 TXLNGQ9NUQ3 528 aa12.88□□□□□ -0.35
CLK3-218ENST00000566926 ANKMY1Q9P2S6 941 aa12.88□□□□□ -0.35
CLK3-218ENST00000566926 IL17BQ9UHF5 180 aa12.88□□□□□ -0.35
CLK3-218ENST00000566926 FARSAQ9Y285 508 aaKnown RBP12.88□□□□□ -0.35
CLK3-218ENST00000566926 KLK4Q9Y5K2 254 aa12.88□□□□□ -0.35
CLK3-218ENST00000566926 LOC400499M0QZD8 3231 aa12.87□□□□□ -0.35
CLK3-218ENST00000566926 TERTO14746 1132 aaKnown RBP12.87□□□□□ -0.35
CLK3-218ENST00000566926 ZSCAN9O15535 394 aaPredicted RBP12.87□□□□□ -0.35
CLK3-218ENST00000566926 SRPX2O60687 465 aaPredicted RBP12.87□□□□□ -0.35
CLK3-218ENST00000566926 TRIM13O60858 407 aa12.87□□□□□ -0.35
CLK3-218ENST00000566926 CREG1O75629 220 aa12.87□□□□□ -0.35
CLK3-218ENST00000566926 TSPAN12O95859 305 aa12.87□□□□□ -0.35
CLK3-218ENST00000566926 FAM107AO95990 144 aa12.87□□□□□ -0.35
CLK3-218ENST00000566926 SERPINE1P05121 402 aa12.87□□□□□ -0.35
CLK3-218ENST00000566926 VIMP08670 466 aaKnown RBP12.87□□□□□ -0.35
CLK3-218ENST00000566926 ENO2P09104 434 aaPredicted RBP12.87□□□□□ -0.35
CLK3-218ENST00000566926 RAB40ALP0C0E4 278 aa12.87□□□□□ -0.35
CLK3-218ENST00000566926 PTPN4P29074 926 aa12.87□□□□□ -0.35
CLK3-218ENST00000566926 ALDH3A1P30838 453 aa12.87□□□□□ -0.35
CLK3-218ENST00000566926 GRIA3P42263 894 aa12.87□□□□□ -0.35
CLK3-218ENST00000566926 GLRBP48167 497 aa12.87□□□□□ -0.35
CLK3-218ENST00000566926 ARSFP54793 590 aa12.87□□□□□ -0.35
CLK3-218ENST00000566926 DNAJB13P59910 316 aa12.87□□□□□ -0.35
CLK3-218ENST00000566926 CYP4F2P78329 520 aa12.87□□□□□ -0.35
CLK3-218ENST00000566926 ABATP80404 500 aa12.87□□□□□ -0.35
CLK3-218ENST00000566926 DLG1Q12959 904 aa12.87□□□□□ -0.35
CLK3-218ENST00000566926 TSTA3Q13630 321 aaPredicted RBP12.87□□□□□ -0.35
CLK3-218ENST00000566926 FASTKQ14296 549 aaKnown RBP12.87□□□□□ -0.35
CLK3-218ENST00000566926 PCLAFQ15004 111 aa12.87□□□□□ -0.35
CLK3-218ENST00000566926 TERF2Q15554 542 aa12.87□□□□□ -0.35
CLK3-218ENST00000566926 DEFB110Q30KQ9 67 aa12.87□□□□□ -0.35
CLK3-218ENST00000566926 CDKL4Q5MAI5 379 aa12.87□□□□□ -0.35
CLK3-218ENST00000566926 YOD1Q5VVQ6 348 aaPredicted RBP12.87□□□□□ -0.35
CLK3-218ENST00000566926 LIPMQ5VYY2 423 aa12.87□□□□□ -0.35
CLK3-218ENST00000566926 TTC19Q6DKK2 380 aaPredicted RBP12.87□□□□□ -0.35
CLK3-218ENST00000566926 RHBDD2Q6NTF9 364 aa12.87□□□□□ -0.35
CLK3-218ENST00000566926 C16orf46Q6P387 395 aa12.87□□□□□ -0.35
CLK3-218ENST00000566926 BORAQ6PGQ7 559 aa12.87□□□□□ -0.35
CLK3-218ENST00000566926 TMEM207Q6UWW9 146 aa12.87□□□□□ -0.35
CLK3-218ENST00000566926 ZNF517Q6ZMY9 492 aaPredicted RBP12.87□□□□□ -0.35
CLK3-218ENST00000566926 PIWIL4Q7Z3Z4 852 aaKnown RBP12.87□□□□□ -0.35
CLK3-218ENST00000566926 MCATQ8IVS2 390 aaKnown RBP12.87□□□□□ -0.35
CLK3-218ENST00000566926 PROKR1Q8TCW9 393 aa12.87□□□□□ -0.35
CLK3-218ENST00000566926 ANKRD49Q8WVL7 239 aa12.87□□□□□ -0.35
CLK3-218ENST00000566926 ZNF75CPQ92670 426 aaPredicted RBP12.87□□□□□ -0.35
CLK3-218ENST00000566926 EXTL1Q92935 676 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms