RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 COMMD10Q9Y6G5 202 aa16.24■□□□□ 0.19
CLN3-216ENST00000565316 SVILO95425 2214 aa16.24■□□□□ 0.19
CLN3-216ENST00000565316 KCNE1BA0A087WTH5 132 aa16.23■□□□□ 0.19
CLN3-216ENST00000565316 A0A0A6YYC8 382 aaPredicted RBP16.23■□□□□ 0.19
CLN3-216ENST00000565316 TRAV17A0A0B4J275 112 aa16.23■□□□□ 0.19
CLN3-216ENST00000565316 DYTNA2CJ06 578 aa16.23■□□□□ 0.19
CLN3-216ENST00000565316 I3L1I5 382 aaPredicted RBP16.23■□□□□ 0.19
CLN3-216ENST00000565316 EIF3FO00303 357 aaPredicted RBP16.23■□□□□ 0.19
CLN3-216ENST00000565316 ZBTB14O43829 449 aa16.23■□□□□ 0.19
CLN3-216ENST00000565316 HRH2P25021 359 aa16.23■□□□□ 0.19
CLN3-216ENST00000565316 IMPA1P29218 277 aa16.23■□□□□ 0.19
CLN3-216ENST00000565316 SLC1A2P43004 574 aa16.23■□□□□ 0.19
CLN3-216ENST00000565316 EFNA3P52797 238 aa16.23■□□□□ 0.19
CLN3-216ENST00000565316 PER3P56645 1201 aa16.23■□□□□ 0.19
CLN3-216ENST00000565316 ARG2P78540 354 aa16.23■□□□□ 0.19
CLN3-216ENST00000565316 CUL1Q13616 776 aa16.23■□□□□ 0.19
CLN3-216ENST00000565316 PCOLCEQ15113 449 aa16.23■□□□□ 0.19
CLN3-216ENST00000565316 INAQ16352 499 aa16.23■□□□□ 0.19
CLN3-216ENST00000565316 AGGF1Q8N302 714 aaeCLIP16.23■□□□□ 0.19
CLN3-216ENST00000565316 CD200R1Q8TD46 325 aa16.23■□□□□ 0.19
CLN3-216ENST00000565316 IMMP1LQ96LU5 166 aa16.23■□□□□ 0.19
CLN3-216ENST00000565316 GPR21Q99679 349 aa16.23■□□□□ 0.19
CLN3-216ENST00000565316 RNF32Q9H0A6 362 aa16.23■□□□□ 0.19
CLN3-216ENST00000565316 CCDC68Q9H2F9 335 aa16.23■□□□□ 0.19
CLN3-216ENST00000565316 OLAHQ9NV23 265 aa16.23■□□□□ 0.19
CLN3-216ENST00000565316 TMEM184CQ9NVA4 438 aa16.23■□□□□ 0.19
CLN3-216ENST00000565316 PTGFRNQ9P2B2 879 aa16.23■□□□□ 0.19
CLN3-216ENST00000565316 H7BY64 318 aa16.22■□□□□ 0.19
CLN3-216ENST00000565316 KIF5CO60282 957 aa16.22■□□□□ 0.19
CLN3-216ENST00000565316 CELA2AP08217 269 aa16.22■□□□□ 0.19
CLN3-216ENST00000565316 CYC1P08574 325 aa16.22■□□□□ 0.19
CLN3-216ENST00000565316 ICAM2P13598 275 aa16.22■□□□□ 0.19
CLN3-216ENST00000565316 TDGF1P3P51864 188 aa16.22■□□□□ 0.19
CLN3-216ENST00000565316 AP2B1P63010 937 aa16.22■□□□□ 0.19
CLN3-216ENST00000565316 SNRPNP63162 240 aaKnown RBP16.22■□□□□ 0.19
CLN3-216ENST00000565316 CYP1B1Q16678 543 aa16.22■□□□□ 0.19
CLN3-216ENST00000565316 NDUFA9Q16795 377 aa16.22■□□□□ 0.19
CLN3-216ENST00000565316 LONRF1Q17RB8 773 aa16.22■□□□□ 0.19
CLN3-216ENST00000565316 SYT16Q17RD7 645 aa16.22■□□□□ 0.19
CLN3-216ENST00000565316 VN1R4Q7Z5H5 301 aa16.22■□□□□ 0.19
CLN3-216ENST00000565316 PLD3Q8IV08 490 aa16.22■□□□□ 0.19
CLN3-216ENST00000565316 LRRC8AQ8IWT6 810 aa16.22■□□□□ 0.19
CLN3-216ENST00000565316 SIRT6Q8N6T7 355 aa16.22■□□□□ 0.19
CLN3-216ENST00000565316 CALML6Q8TD86 181 aa16.22■□□□□ 0.19
CLN3-216ENST00000565316 MAGOHBQ96A72 148 aaKnown RBP16.22■□□□□ 0.19
CLN3-216ENST00000565316 SIGLEC10Q96LC7 697 aa16.22■□□□□ 0.19
CLN3-216ENST00000565316 PRAP1Q96NZ9 151 aa16.22■□□□□ 0.19
CLN3-216ENST00000565316 TAAR6Q96RI8 345 aa16.22■□□□□ 0.19
CLN3-216ENST00000565316 MKL2Q9ULH7 1088 aa16.22■□□□□ 0.19
CLN3-216ENST00000565316 APCP25054 2843 aa16.22■□□□□ 0.19
CLN3-216ENST00000565316 H0YIG0 161 aa16.21■□□□□ 0.19
CLN3-216ENST00000565316 GOLGA8MH3BSY2 632 aa16.21■□□□□ 0.19
CLN3-216ENST00000565316 WFS1O76024 890 aa16.21■□□□□ 0.19
CLN3-216ENST00000565316 SYF2O95926 243 aaKnown RBP16.21■□□□□ 0.19
CLN3-216ENST00000565316 ITGAMP11215 1152 aa16.21■□□□□ 0.19
CLN3-216ENST00000565316 COILP38432 576 aaPredicted RBP16.21■□□□□ 0.19
CLN3-216ENST00000565316 CCZ1BP86790 482 aa16.21■□□□□ 0.19
CLN3-216ENST00000565316 CCZ1P86791 482 aaPredicted RBP16.21■□□□□ 0.19
CLN3-216ENST00000565316 ZRSR2Q15696 482 aaKnown RBP16.21■□□□□ 0.19
CLN3-216ENST00000565316 FAAH2Q6GMR7 532 aa16.21■□□□□ 0.19
CLN3-216ENST00000565316 UBE2R2Q712K3 238 aaPredicted RBP16.21■□□□□ 0.19
CLN3-216ENST00000565316 PIWIL4Q7Z3Z4 852 aaKnown RBP16.21■□□□□ 0.19
CLN3-216ENST00000565316 ADCK2Q7Z695 626 aa16.21■□□□□ 0.19
CLN3-216ENST00000565316 TICAM1Q8IUC6 712 aa16.21■□□□□ 0.19
CLN3-216ENST00000565316 CPNE9Q8IYJ1 553 aa16.21■□□□□ 0.19
CLN3-216ENST00000565316 SLC34A3Q8N130 599 aa16.21■□□□□ 0.19
CLN3-216ENST00000565316 NAT8LQ8N9F0 302 aa16.21■□□□□ 0.19
CLN3-216ENST00000565316 THAP11Q96EK4 314 aa16.21■□□□□ 0.19
CLN3-216ENST00000565316 PBKQ96KB5 322 aa16.21■□□□□ 0.19
CLN3-216ENST00000565316 AARSD1Q9BTE6 412 aaKnown RBP16.21■□□□□ 0.19
CLN3-216ENST00000565316 TUBB6Q9BUF5 446 aa16.21■□□□□ 0.19
CLN3-216ENST00000565316 C20orf96Q9NUD7 363 aaPredicted RBP16.21■□□□□ 0.19
CLN3-216ENST00000565316 FBXO5Q9UKT4 447 aa16.21■□□□□ 0.19
CLN3-216ENST00000565316 ZGRF1Q86YA3 2104 aa16.21■□□□□ 0.19
CLN3-216ENST00000565316 A0A1B0GUH1 482 aa16.2■□□□□ 0.18
CLN3-216ENST00000565316 JRKO75564 520 aa16.2■□□□□ 0.18
CLN3-216ENST00000565316 HAUS5O94927 633 aa16.2■□□□□ 0.18
CLN3-216ENST00000565316 NSA2O95478 260 aaKnown RBP16.2■□□□□ 0.18
CLN3-216ENST00000565316 WDPCPO95876 746 aa16.2■□□□□ 0.18
CLN3-216ENST00000565316 AVPR1BP47901 424 aa16.2■□□□□ 0.18
CLN3-216ENST00000565316 RPS15AP62244 130 aaKnown RBP16.2■□□□□ 0.18
CLN3-216ENST00000565316 MPP1Q00013 466 aa16.2■□□□□ 0.18
CLN3-216ENST00000565316 MAT1AQ00266 395 aaKnown RBP16.2■□□□□ 0.18
CLN3-216ENST00000565316 TIAL1Q01085 375 aaKnown RBP eCLIP16.2■□□□□ 0.18
CLN3-216ENST00000565316 THEMIS2Q5TEJ8 643 aa16.2■□□□□ 0.18
CLN3-216ENST00000565316 OR9A4Q8NGU2 314 aa16.2■□□□□ 0.18
CLN3-216ENST00000565316 NR4A3Q92570 626 aa16.2■□□□□ 0.18
CLN3-216ENST00000565316 RELTQ969Z4 430 aa16.2■□□□□ 0.18
CLN3-216ENST00000565316 MS4A14Q96JA4 679 aa16.2■□□□□ 0.18
CLN3-216ENST00000565316 VN1R1Q9GZP7 353 aa16.2■□□□□ 0.18
CLN3-216ENST00000565316 PCBD2Q9H0N5 130 aa16.2■□□□□ 0.18
CLN3-216ENST00000565316 CCDC177Q9NQR7 707 aaPredicted RBP16.2■□□□□ 0.18
CLN3-216ENST00000565316 ABCF3Q9NUQ8 709 aa16.2■□□□□ 0.18
CLN3-216ENST00000565316 PPP2R2CQ9Y2T4 447 aa16.2■□□□□ 0.18
CLN3-216ENST00000565316 JRKLQ9Y4A0 524 aa16.2■□□□□ 0.18
CLN3-216ENST00000565316 CROCCQ5TZA2 2017 aa16.2■□□□□ 0.18
CLN3-216ENST00000565316 C8orf89P0DMQ9 161 aa16.19■□□□□ 0.18
CLN3-216ENST00000565316 TBPL1P62380 186 aa16.19■□□□□ 0.18
CLN3-216ENST00000565316 CSNK1G2P78368 415 aa16.19■□□□□ 0.18
CLN3-216ENST00000565316 HSP90AA5PQ58FG0 334 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms