RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 VDRP11473 427 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 F3P13726 295 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 MAGEA11P43364 429 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 MYL7Q01449 175 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 KBTBD12Q3ZCT8 623 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 IQCCQ4KMZ1 466 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 DDX59Q5T1V6 619 aaKnown RBP eCLIP4.19□□□□□ -1.74
LINC00560-201ENST00000564593 PRSS55Q6UWB4 352 aaPredicted RBP4.19□□□□□ -1.74
LINC00560-201ENST00000564593 UNC45BQ8IWX7 931 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 CLYBLQ8N0X4 340 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 MARVELD2Q8N4S9 558 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 C10orf53Q8N6V4 93 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 ZNF713Q8N859 430 aaPredicted RBP4.19□□□□□ -1.74
LINC00560-201ENST00000564593 PIK3R3Q92569 461 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 PTP4A1Q93096 173 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 CENPTQ96BT3 561 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 KLHL5Q96PQ7 755 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 SRD5A3Q9H8P0 318 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 DNAJC17Q9NVM6 304 aaKnown RBP4.19□□□□□ -1.74
LINC00560-201ENST00000564593 TMEM161AQ9NX61 479 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 OR6C2Q9NZP2 312 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 FBXL5Q9UKA1 691 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 KIF21BO75037 1637 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 ARID2Q68CP9 1835 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 BICRAQ9NZM4 1560 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 TRBV5-5A0A0J9YX44 114 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 LRRD1A4D1F6 860 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 C2CD4DB7Z1M9 353 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 FPGTO14772 594 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 EXTL3O43909 919 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 NADKO95544 446 aaPredicted RBP4.19□□□□□ -1.74
LINC00560-201ENST00000564593 EML2O95834 649 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 GH1P01241 217 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 FAM157CP0CG43 387 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 ANOS1P23352 680 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 MAP2K2P36507 400 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 FRKP42685 505 aaPredicted RBP4.19□□□□□ -1.74
LINC00560-201ENST00000564593 GLIPR1P48060 266 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 DNA2P51530 1060 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 LBX1P52954 281 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 SNU13P55769 128 aaKnown RBP4.19□□□□□ -1.74
LINC00560-201ENST00000564593 PODNL1Q6PEZ8 512 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 TMEM207Q6UWW9 146 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 MEX3BQ6ZN04 569 aaKnown RBP4.19□□□□□ -1.74
LINC00560-201ENST00000564593 ANKRD46Q86W74 232 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 MEX3DQ86XN8 651 aaKnown RBP4.19□□□□□ -1.74
LINC00560-201ENST00000564593 RCOR2Q8IZ40 523 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 NIPA2Q8N8Q9 360 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 MSANTD4Q8NCY6 345 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 BTBD9Q96Q07 612 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 CDCA3Q99618 268 aaPredicted RBP4.19□□□□□ -1.74
LINC00560-201ENST00000564593 ZNF350Q9GZX5 532 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 IL1RAPL2Q9NP60 686 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 INTS10Q9NVR2 710 aaKnown RBP4.19□□□□□ -1.74
LINC00560-201ENST00000564593 CNIH4Q9P003 139 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 PA2G4Q9UQ80 394 aaKnown RBP4.19□□□□□ -1.74
LINC00560-201ENST00000564593 HBS1LQ9Y450 684 aaKnown RBP4.19□□□□□ -1.74
LINC00560-201ENST00000564593 KLK4Q9Y5K2 254 aa4.19□□□□□ -1.74
LINC00560-201ENST00000564593 WRNQ14191 1432 aaPredicted RBP eCLIP4.18□□□□□ -1.74
LINC00560-201ENST00000564593 CCDC88BA6NC98 1476 aa4.18□□□□□ -1.74
LINC00560-201ENST00000564593 GOLGA3Q08378 1498 aa4.18□□□□□ -1.74
LINC00560-201ENST00000564593 BAZ1BQ9UIG0 1483 aaKnown RBP4.18□□□□□ -1.74
LINC00560-201ENST00000564593 TRAV18A0A075B6X5 111 aa4.18□□□□□ -1.74
LINC00560-201ENST00000564593 ILVBLA1L0T0 632 aa4.18□□□□□ -1.74
LINC00560-201ENST00000564593 SNURFLB1AK76 121 aa4.18□□□□□ -1.74
LINC00560-201ENST00000564593 NPIPA3F8WFD2 350 aa4.18□□□□□ -1.74
LINC00560-201ENST00000564593 CRCPO75575 148 aa4.18□□□□□ -1.74
LINC00560-201ENST00000564593 CDC123O75794 336 aaPredicted RBP4.18□□□□□ -1.74
LINC00560-201ENST00000564593 GOSR1O95249 250 aa4.18□□□□□ -1.74
LINC00560-201ENST00000564593 ATP1B1P05026 303 aa4.18□□□□□ -1.74
LINC00560-201ENST00000564593 SP9P0CG40 484 aa4.18□□□□□ -1.74
LINC00560-201ENST00000564593 PIK3R1P27986 724 aa4.18□□□□□ -1.74
LINC00560-201ENST00000564593 CHRNB4P30926 498 aa4.18□□□□□ -1.74
LINC00560-201ENST00000564593 CDKN1AP38936 164 aa4.18□□□□□ -1.74
LINC00560-201ENST00000564593 STX1BP61266 288 aa4.18□□□□□ -1.74
LINC00560-201ENST00000564593 RBM39Q14498 530 aaKnown RBP4.18□□□□□ -1.74
LINC00560-201ENST00000564593 MORF4L2Q15014 288 aa4.18□□□□□ -1.74
LINC00560-201ENST00000564593 FAM53AQ6NSI3 398 aaPredicted RBP4.18□□□□□ -1.74
LINC00560-201ENST00000564593 NHLRC1Q6VVB1 395 aa4.18□□□□□ -1.74
LINC00560-201ENST00000564593 GPR141Q7Z602 305 aa4.18□□□□□ -1.74
LINC00560-201ENST00000564593 LRTM2Q8N967 370 aa4.18□□□□□ -1.74
LINC00560-201ENST00000564593 SLC37A3Q8NCC5 494 aa4.18□□□□□ -1.74
LINC00560-201ENST00000564593 KIAA0895Q8NCT3 520 aa4.18□□□□□ -1.74
LINC00560-201ENST00000564593 TRIM58Q8NG06 486 aa4.18□□□□□ -1.74
LINC00560-201ENST00000564593 OR2T11Q8NH01 316 aa4.18□□□□□ -1.74
LINC00560-201ENST00000564593 DYRK2Q92630 601 aa4.18□□□□□ -1.74
LINC00560-201ENST00000564593 PGLYRP2Q96PD5 576 aa4.18□□□□□ -1.74
LINC00560-201ENST00000564593 ATG101Q9BSB4 218 aa4.18□□□□□ -1.74
LINC00560-201ENST00000564593 PITPNM3Q9BZ71 974 aa4.18□□□□□ -1.74
LINC00560-201ENST00000564593 RAVER2Q9HCJ3 691 aaKnown RBP4.18□□□□□ -1.74
LINC00560-201ENST00000564593 PDRG1Q9NUG6 133 aa4.18□□□□□ -1.74
LINC00560-201ENST00000564593 MTRRQ9UBK8 725 aa4.18□□□□□ -1.74
LINC00560-201ENST00000564593 GPR132Q9UNW8 380 aa4.18□□□□□ -1.74
LINC00560-201ENST00000564593 PPP2R2CQ9Y2T4 447 aa4.18□□□□□ -1.74
LINC00560-201ENST00000564593 HMGXB3Q12766 1538 aa4.18□□□□□ -1.74
LINC00560-201ENST00000564593 ACEP12821 1306 aa4.18□□□□□ -1.74
LINC00560-201ENST00000564593 ERVV-2B6SEH9 535 aa4.17□□□□□ -1.74
LINC00560-201ENST00000564593 NME6O75414 186 aaPredicted RBP4.17□□□□□ -1.74
LINC00560-201ENST00000564593 RAD51DO75771 328 aa4.17□□□□□ -1.74
LINC00560-201ENST00000564593 SLC16A8O95907 504 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms