RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 C5orf22Q49AR2 442 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 IRAK1BP1Q5VVH5 260 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 KHDRBS2Q5VWX1 349 aaKnown RBP5.25□□□□□ -1.57
VPS13C-209ENST00000560637 ADNP2Q6IQ32 1131 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 FIGLAQ6QHK4 219 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 BNC2Q6ZN30 1099 aaPredicted RBP5.25□□□□□ -1.57
VPS13C-209ENST00000560637 TICAM1Q8IUC6 712 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 TCAIMQ8N3R3 496 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 CAMKK1Q8N5S9 505 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 KRTCAP2Q8N6L1 136 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 FITM2Q8N6M3 262 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 KYQ8NBH2 561 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 GPR150Q8NGU9 434 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 SLC22A18Q96BI1 424 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 PEX11GQ96HA9 241 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 NDC1Q9BTX1 674 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 FAIM2Q9BWQ8 316 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 OR8D2Q9GZM6 311 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 NPDC1Q9NQX5 325 aaPredicted RBP5.25□□□□□ -1.57
VPS13C-209ENST00000560637 SPHK1Q9NYA1 384 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 TAGLN3Q9UI15 199 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 DLGAP4Q9Y2H0 992 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 FAM32AQ9Y421 112 aaKnown RBP5.25□□□□□ -1.57
VPS13C-209ENST00000560637 SLCO1B1Q9Y6L6 691 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 ZNF780BQ9Y6R6 833 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 PI4KAP42356 2102 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 FAM149AA5PLN7 773 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 OR2W5A6NFC9 320 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 SHISA7A6NL88 538 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 SOBPA7XYQ1 873 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 C2orf74A8MZ97 194 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 TMEM150CB9EJG8 249 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 SLC28A1O00337 649 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 GNB5O14775 395 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 SNRPB2P08579 225 aaKnown RBP5.25□□□□□ -1.57
VPS13C-209ENST00000560637 COX4I1P13073 169 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 SHMT2P34897 504 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 MAGEA3P43357 314 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 MCCD1P59942 119 aaPredicted RBP5.25□□□□□ -1.57
VPS13C-209ENST00000560637 UFM1P61960 85 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 IRX1P78414 480 aaPredicted RBP5.25□□□□□ -1.57
VPS13C-209ENST00000560637 OC90Q02509 493 aaPredicted RBP5.25□□□□□ -1.57
VPS13C-209ENST00000560637 OCA2Q04671 838 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 KLF10Q13118 480 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 OTUD3Q5T2D3 398 aaPredicted RBP5.25□□□□□ -1.57
VPS13C-209ENST00000560637 MACC1Q6ZN28 852 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 KIAA2013Q8IYS2 634 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 FBXL6Q8N531 539 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 MINDY1Q8N5J2 469 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 DDX51Q8N8A6 666 aaKnown RBP eCLIP5.25□□□□□ -1.57
VPS13C-209ENST00000560637 OR4A15Q8NGL6 344 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 OR2L2Q8NH16 312 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 HUS1BQ8NHY5 278 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 EZH1Q92800 747 aaPredicted RBP5.25□□□□□ -1.57
VPS13C-209ENST00000560637 VPS50Q96JG6 964 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 GFM1Q96RP9 751 aaKnown RBP5.25□□□□□ -1.57
VPS13C-209ENST00000560637 MCCC1Q96RQ3 725 aaPredicted RBP5.25□□□□□ -1.57
VPS13C-209ENST00000560637 HAUS8Q9BT25 410 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 TRMOQ9BU70 441 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 EHD1Q9H4M9 534 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 PDE7BQ9NP56 450 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 C1orf109Q9NX04 203 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 IKZF3Q9UKT9 509 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 SNX13Q9Y5W8 968 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 FRMPD3Q5JV73 1810 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 NOTCH4Q99466 2003 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 METTL12A8MUP2 240 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 MANBAO00462 879 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 PLRG1O43660 514 aaKnown RBP5.25□□□□□ -1.57
VPS13C-209ENST00000560637 EPN2O95208 641 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 MATN4O95460 622 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 RPLP0P05388 317 aaKnown RBP5.25□□□□□ -1.57
VPS13C-209ENST00000560637 CEACAM5P06731 702 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 NR2F1P10589 423 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 NCK1P16333 377 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 MPLP40238 635 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 CLCN7P51798 805 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 GFERP55789 205 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 NCALDP61601 193 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 KCNJ2P63252 427 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 MRPS22P82650 360 aaKnown RBP5.25□□□□□ -1.57
VPS13C-209ENST00000560637 ZXDAP98168 799 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 MAT1AQ00266 395 aaKnown RBP5.25□□□□□ -1.57
VPS13C-209ENST00000560637 HLA-BQ31612 363 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 C3orf38Q5JPI3 329 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 SPANXN4Q5MJ08 99 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 TMEM184AQ6ZMB5 413 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 USP30Q70CQ3 517 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 TECPR1Q7Z6L1 1165 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 CCDC116Q8IYX3 515 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 CSNK1A1LQ8N752 337 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 METTL21AQ8WXB1 218 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 DLG3Q92796 817 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 PEX13Q92968 403 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 RHBDF1Q96CC6 855 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 EGLN2Q96KS0 407 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 BMFQ96LC9 184 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 DCBLD2Q96PD2 775 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 KCTD14Q9BQ13 255 aaPredicted RBP5.25□□□□□ -1.57
VPS13C-209ENST00000560637 TUBB6Q9BUF5 446 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms