RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 GPSM1Q86YR5 675 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 LURAP1LQ8IV03 231 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 PLD3Q8IV08 490 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 ZNF843Q8N446 348 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 ABHD11Q8NFV4 315 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 PROKR1Q8TCW9 393 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 KCTD4Q8WVF5 259 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 UBLCP1Q8WVY7 318 aaPredicted RBP8.95□□□□□ -0.98
LDLR-211ENST00000560173 STARD8Q92502 1023 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 ALKBH8Q96BT7 664 aaKnown RBP8.95□□□□□ -0.98
LDLR-211ENST00000560173 RHBDF1Q96CC6 855 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 PRAP1Q96NZ9 151 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 GBP5Q96PP8 586 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 OR2A5Q96R48 311 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 EGFL8Q99944 293 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 DPH2Q9BQC3 489 aaPredicted RBP8.95□□□□□ -0.98
LDLR-211ENST00000560173 NDC1Q9BTX1 674 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 SLC7A5P2Q9GIP4 190 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 PPCSQ9HAB8 311 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 NMRAL1Q9HBL8 299 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 STARD5Q9NSY2 213 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 TMEM184CQ9NVA4 438 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 DHCR7Q9UBM7 475 aaKnown RBP8.95□□□□□ -0.98
LDLR-211ENST00000560173 KCND3Q9UK17 655 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 ACOT9Q9Y305 439 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 MRPS18BQ9Y676 258 aaKnown RBP8.95□□□□□ -0.98
LDLR-211ENST00000560173 IKBKGQ9Y6K9 419 aa8.95□□□□□ -0.98
LDLR-211ENST00000560173 A0A096LPK6 155 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 A0A1B0GX78 115 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 NCF1BA6NI72 391 aaPredicted RBP8.94□□□□□ -0.98
LDLR-211ENST00000560173 NCF1CA8MVU1 366 aaPredicted RBP8.94□□□□□ -0.98
LDLR-211ENST00000560173 HMGB1P1B2RPK0 211 aaPredicted RBP8.94□□□□□ -0.98
LDLR-211ENST00000560173 NKX2-8O15522 239 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 KERAO60938 352 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 KRT38O76015 456 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 MED26O95402 600 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 NUDT17P0C025 328 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 RAB40ALP0C0E4 278 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 MYZAPP0CAP1 466 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 NCF1P14598 390 aaPredicted RBP8.94□□□□□ -0.98
LDLR-211ENST00000560173 ITGAXP20702 1163 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 CNTFP26441 200 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 TYK2P29597 1187 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 HSD17B3P37058 310 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 KCNC1P48547 511 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 ARSFP54793 590 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 CYP4F2P78329 520 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 SLC29A2Q14542 456 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 NCF4Q15080 339 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 C18orf21Q32NC0 220 aaPredicted RBP8.94□□□□□ -0.98
LDLR-211ENST00000560173 CRTC2Q53ET0 693 aaPredicted RBP8.94□□□□□ -0.98
LDLR-211ENST00000560173 C1orf189Q5VU69 101 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 SULT1C3Q6IMI6 304 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 TTLL10Q6ZVT0 673 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 VN1R4Q7Z5H5 301 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 ISCA2Q86U28 154 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 THOC6Q86W42 341 aaKnown RBP8.94□□□□□ -0.98
LDLR-211ENST00000560173 TCAIMQ8N3R3 496 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 ARFGAP2Q8N6H7 521 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 CSNK1A1LQ8N752 337 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 TTC29Q8NA56 475 aaPredicted RBP8.94□□□□□ -0.98
LDLR-211ENST00000560173 ZSCAN1Q8NBB4 408 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 PDPRQ8NCN5 879 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 STAG3L4Q8TBR4 150 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 SLC5A11Q8WWX8 675 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 NEIL2Q969S2 332 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 NXNL1Q96CM4 212 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 C10orf90Q96M02 699 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 GPR78Q96P69 363 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 ATOH8Q96SQ7 321 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 SH3GL2Q99962 352 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 CCDC77Q9BR77 488 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 TMEM79Q9BSE2 394 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 GPR87Q9BY21 358 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 ROPN1BQ9BZX4 212 aaPredicted RBP8.94□□□□□ -0.98
LDLR-211ENST00000560173 FAM117AQ9C073 453 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 ACTL8Q9H568 366 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 ALG9Q9H6U8 611 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 ROPN1Q9HAT0 212 aaPredicted RBP8.94□□□□□ -0.98
LDLR-211ENST00000560173 CUTCQ9NTM9 273 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 TXLNGQ9NUQ3 528 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 TLK1Q9UKI8 766 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 RNF112Q9ULX5 631 aa8.94□□□□□ -0.98
LDLR-211ENST00000560173 HECTD1Q9ULT8 2610 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 KCNE1BA0A087WTH5 132 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 CCDC189A1A4V9 331 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 HYKKA2RU49 373 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 TRIM49D1C9J1S8 452 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 C9J4A7 227 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 J3QKU1 62 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 DSCR3O14972 297 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 TAPBPO15533 448 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 P2RX6O15547 441 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 KATNA1O75449 491 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 CREG1O75629 220 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 IPO13O94829 963 aaKnown RBP8.93□□□□□ -0.98
LDLR-211ENST00000560173 KLHL2O95198 593 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 ONECUT2O95948 504 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 EIF2S1P05198 315 aaKnown RBP8.93□□□□□ -0.98
LDLR-211ENST00000560173 AGXTP21549 392 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms