RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 MANEAQ5SRI9 462 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 ZNF425Q6IV72 752 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 MED27Q6P2C8 311 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 TLDC1Q6P9B6 456 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 CEACAM20Q6UY09 585 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 SLCO4C1Q6ZQN7 724 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 TRIM73Q86UV7 250 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 MCATQ8IVS2 390 aaKnown RBP8.86□□□□□ -0.99
LDLR-210ENST00000559340 GPR135Q8IZ08 494 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 LSMEM2Q8N112 164 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 DNAJC22Q8N4W6 341 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 AFAP1L2Q8N4X5 818 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 CAMKVQ8NCB2 501 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 TRPV3Q8NET8 790 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 MGARPQ8TDB4 240 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 TMEM237Q96Q45 408 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 TEFMQ96QE5 360 aaKnown RBP8.86□□□□□ -0.99
LDLR-210ENST00000559340 OR4K3Q96R72 315 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 ZNF382Q96SR6 550 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 NRTNQ99748 197 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 ZFYVE21Q9BQ24 234 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 SARGQ9BW04 601 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 GATA5Q9BWX5 397 aaPredicted RBP8.86□□□□□ -0.99
LDLR-210ENST00000559340 B3GNT4Q9C0J1 378 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 C12orf65Q9H3J6 166 aaKnown RBP8.86□□□□□ -0.99
LDLR-210ENST00000559340 NOL11Q9H8H0 719 aaKnown RBP8.86□□□□□ -0.99
LDLR-210ENST00000559340 SLC6A20Q9NP91 592 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 SEMA4BQ9NPR2 832 aaPredicted RBP8.86□□□□□ -0.99
LDLR-210ENST00000559340 FBXO8Q9NRD0 319 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 INTS9Q9NV88 658 aaKnown RBP8.86□□□□□ -0.99
LDLR-210ENST00000559340 IRAK4Q9NWZ3 460 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 TMEM9Q9P0T7 183 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 RARRES3Q9UL19 164 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 AP1M2Q9Y6Q5 423 aa8.86□□□□□ -0.99
LDLR-210ENST00000559340 SCN2AQ99250 2005 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 MAP1BP46821 2468 aaKnown RBP8.85□□□□□ -0.99
LDLR-210ENST00000559340 A0A0J9YVX5 310 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 WDR91A4D1P6 747 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 EFCAB7A8K855 629 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 E7EQ34 232 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 POLR1CO15160 346 aaPredicted RBP8.85□□□□□ -0.99
LDLR-210ENST00000559340 OR1F1O43749 312 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 WFS1O76024 890 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 KRT6AP02538 564 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 KRT6BP04259 564 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 SERPINE1P05121 402 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 HGFP14210 728 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 PVRP15151 417 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 RBMS1P29558 406 aaKnown RBP8.85□□□□□ -0.99
LDLR-210ENST00000559340 LSSP48449 732 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 KRT6CP48668 564 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 CDH13P55290 713 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 ITGA1P56199 1179 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 SKP1P63208 163 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 REEP5Q00765 189 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 ZNF33BQ06732 778 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 FOXM1Q08050 763 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 RGS1Q08116 209 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 IFT88Q13099 833 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 STX3Q13277 289 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 MPP2Q14168 576 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 DOC2AQ14183 400 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 RCN2Q14257 317 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 C16orf72Q14CZ0 275 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 RBBP5Q15291 538 aaKnown RBP8.85□□□□□ -0.99
LDLR-210ENST00000559340 NDUFA9Q16795 377 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 FAM214AQ32MH5 1076 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 GGTA1PQ4G0N0 100 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 CATSPEREQ5SY80 951 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 DCAF12Q5T6F0 453 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 YOD1Q5VVQ6 348 aaPredicted RBP8.85□□□□□ -0.99
LDLR-210ENST00000559340 TTC19Q6DKK2 380 aaPredicted RBP8.85□□□□□ -0.99
LDLR-210ENST00000559340 FCRL6Q6DN72 434 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 GRHL2Q6ISB3 625 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 NIPAL1Q6NVV3 410 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 FBXO42Q6P3S6 717 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 TMIGD1Q6UXZ0 262 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 FRMD7Q6ZUT3 714 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 GPRIN3Q6ZVF9 776 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 RNF44Q7L0R7 432 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 TMPRSS9Q7Z410 1059 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 B3GNT8Q7Z7M8 397 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 FAM129CQ86XR2 697 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 MYLK4Q86YV6 388 aaPredicted RBP8.85□□□□□ -0.99
LDLR-210ENST00000559340 L3MBTL4Q8NA19 623 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 TTC29Q8NA56 475 aaPredicted RBP8.85□□□□□ -0.99
LDLR-210ENST00000559340 MFSD9Q8NBP5 474 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 RCBTB1Q8NDN9 531 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 FAM76AQ8TAV0 307 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 TRPC4APQ8TEL6 797 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 TAAR9Q96RI9 348 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 SLC29A3Q9BZD2 475 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 ASPSCR1Q9BZE9 553 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 SLC7A5P2Q9GIP4 190 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 FGF21Q9NSA1 209 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 CUEDC1Q9NWM3 386 aaPredicted RBP8.85□□□□□ -0.99
LDLR-210ENST00000559340 NMRK1Q9NWW6 199 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 SLC39A1Q9NY26 324 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 TRPS1Q9UHF7 1281 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 SNX6Q9UNH7 406 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms