RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 ATP6V1B1P15313 513 aa3.29□□□□□ -1.88
VPS13C-208ENST00000559119 ZNF19P17023 458 aa3.29□□□□□ -1.88
VPS13C-208ENST00000559119 GCH1P30793 250 aa3.29□□□□□ -1.88
VPS13C-208ENST00000559119 ALDH1L2Q3SY69 923 aa3.29□□□□□ -1.88
VPS13C-208ENST00000559119 PRR27Q6MZM9 219 aa3.29□□□□□ -1.88
VPS13C-208ENST00000559119 SMC5Q8IY18 1101 aa3.29□□□□□ -1.88
VPS13C-208ENST00000559119 MRAPQ8TCY5 172 aa3.29□□□□□ -1.88
VPS13C-208ENST00000559119 NXNL1Q96CM4 212 aa3.29□□□□□ -1.88
VPS13C-208ENST00000559119 POLR3GLQ9BT43 218 aa3.29□□□□□ -1.88
VPS13C-208ENST00000559119 OCR1Q9BZK8 76 aa3.29□□□□□ -1.88
VPS13C-208ENST00000559119 IKZF3Q9UKT9 509 aa3.29□□□□□ -1.88
VPS13C-208ENST00000559119 ZNF215Q9UL58 517 aaPredicted RBP3.29□□□□□ -1.88
VPS13C-208ENST00000559119 H0Y9J4 135 aa3.28□□□□□ -1.88
VPS13C-208ENST00000559119 TPD52L2O43399 206 aaKnown RBP3.28□□□□□ -1.88
VPS13C-208ENST00000559119 PFKFB1P16118 471 aa3.28□□□□□ -1.88
VPS13C-208ENST00000559119 MGMTP16455 207 aa3.28□□□□□ -1.88
VPS13C-208ENST00000559119 CD27P26842 260 aa3.28□□□□□ -1.88
VPS13C-208ENST00000559119 PKLRP30613 574 aa3.28□□□□□ -1.88
VPS13C-208ENST00000559119 CETN2P41208 172 aa3.28□□□□□ -1.88
VPS13C-208ENST00000559119 STAT2P52630 851 aa3.28□□□□□ -1.88
VPS13C-208ENST00000559119 OPCMLQ14982 345 aa3.28□□□□□ -1.88
VPS13C-208ENST00000559119 TMUB2Q71RG4 321 aa3.28□□□□□ -1.88
VPS13C-208ENST00000559119 ZC3H3Q8IXZ2 948 aaKnown RBP3.28□□□□□ -1.88
VPS13C-208ENST00000559119 C17orf53Q8N3J3 647 aaPredicted RBP3.28□□□□□ -1.88
VPS13C-208ENST00000559119 TCEANCQ8N8B7 351 aa3.28□□□□□ -1.88
VPS13C-208ENST00000559119 OR10S1Q8NGN2 331 aa3.28□□□□□ -1.88
VPS13C-208ENST00000559119 ATL1Q8WXF7 558 aa3.28□□□□□ -1.88
VPS13C-208ENST00000559119 CDCA3Q99618 268 aaPredicted RBP3.28□□□□□ -1.88
VPS13C-208ENST00000559119 CCDC28BQ9BUN5 200 aa3.28□□□□□ -1.88
VPS13C-208ENST00000559119 EGLN3Q9H6Z9 239 aa3.28□□□□□ -1.88
VPS13C-208ENST00000559119 NTNG1Q9Y2I2 539 aa3.28□□□□□ -1.88
VPS13C-208ENST00000559119 C2CD4DB7Z1M9 353 aa3.27□□□□□ -1.89
VPS13C-208ENST00000559119 EPB41L2O43491 1005 aaKnown RBP3.27□□□□□ -1.89
VPS13C-208ENST00000559119 LMO2P25791 158 aa3.27□□□□□ -1.89
VPS13C-208ENST00000559119 PRELPP51888 382 aa3.27□□□□□ -1.89
VPS13C-208ENST00000559119 PPIAP62937 165 aaKnown RBP3.27□□□□□ -1.89
VPS13C-208ENST00000559119 CUL3Q13618 768 aa3.27□□□□□ -1.89
VPS13C-208ENST00000559119 SNAPC1Q16533 368 aa3.27□□□□□ -1.89
VPS13C-208ENST00000559119 UPP1Q16831 310 aa3.27□□□□□ -1.89
VPS13C-208ENST00000559119 Q1RN00 199 aa3.27□□□□□ -1.89
VPS13C-208ENST00000559119 CBWD6Q4V339 395 aa3.27□□□□□ -1.89
VPS13C-208ENST00000559119 FGD3Q5JSP0 725 aa3.27□□□□□ -1.89
VPS13C-208ENST00000559119 CBWD3Q5JTY5 395 aa3.27□□□□□ -1.89
VPS13C-208ENST00000559119 FAM120BQ96EK7 910 aaKnown RBP3.27□□□□□ -1.89
VPS13C-208ENST00000559119 HNRNPABQ99729 332 aaKnown RBP3.27□□□□□ -1.89
VPS13C-208ENST00000559119 HACD3Q9P035 362 aa3.27□□□□□ -1.89
VPS13C-208ENST00000559119 GTF3C4Q9UKN8 822 aa3.27□□□□□ -1.89
VPS13C-208ENST00000559119 FAM205AQ6ZU69 1335 aa3.26□□□□□ -1.89
VPS13C-208ENST00000559119 A0A1W2PPQ1 181 aa3.26□□□□□ -1.89
VPS13C-208ENST00000559119 ARHGEF33A8MVX0 844 aa3.26□□□□□ -1.89
VPS13C-208ENST00000559119 MTRF1O75570 445 aaKnown RBP3.26□□□□□ -1.89
VPS13C-208ENST00000559119 PRDM1O75626 825 aa3.26□□□□□ -1.89
VPS13C-208ENST00000559119 RAB40ALP0C0E4 278 aa3.26□□□□□ -1.89
VPS13C-208ENST00000559119 SAT1P21673 171 aa3.26□□□□□ -1.89
VPS13C-208ENST00000559119 CCR3P51677 355 aa3.26□□□□□ -1.89
VPS13C-208ENST00000559119 RIDAP52758 137 aaKnown RBP3.26□□□□□ -1.89
VPS13C-208ENST00000559119 HNRNPKP61978 463 aaKnown RBP eCLIP3.26□□□□□ -1.89
VPS13C-208ENST00000559119 SRPXP78539 464 aa3.26□□□□□ -1.89
VPS13C-208ENST00000559119 MC1RQ01726 317 aa3.26□□□□□ -1.89
VPS13C-208ENST00000559119 DUSP28Q4G0W2 176 aa3.26□□□□□ -1.89
VPS13C-208ENST00000559119 C9orf66Q5T8R8 295 aa3.26□□□□□ -1.89
VPS13C-208ENST00000559119 KHDRBS2Q5VWX1 349 aaKnown RBP3.26□□□□□ -1.89
VPS13C-208ENST00000559119 CTR9Q6PD62 1173 aa3.26□□□□□ -1.89
VPS13C-208ENST00000559119 APPL2Q8NEU8 664 aa3.26□□□□□ -1.89
VPS13C-208ENST00000559119 SSC4DQ8WTU2 575 aa3.26□□□□□ -1.89
VPS13C-208ENST00000559119 MOB3AQ96BX8 217 aa3.26□□□□□ -1.89
VPS13C-208ENST00000559119 LRRCC1Q9C099 1032 aa3.26□□□□□ -1.89
VPS13C-208ENST00000559119 SLC39A8Q9C0K1 460 aa3.26□□□□□ -1.89
VPS13C-208ENST00000559119 DNAI2Q9GZS0 605 aa3.26□□□□□ -1.89
VPS13C-208ENST00000559119 PNNQ9H307 717 aaKnown RBP3.26□□□□□ -1.89
VPS13C-208ENST00000559119 FAM168BA1KXE4 195 aa3.25□□□□□ -1.89
VPS13C-208ENST00000559119 ECE2O60344 883 aa3.25□□□□□ -1.89
VPS13C-208ENST00000559119 CYTIPO60759 359 aa3.25□□□□□ -1.89
VPS13C-208ENST00000559119 RENP00797 406 aa3.25□□□□□ -1.89
VPS13C-208ENST00000559119 KRT6AP02538 564 aa3.25□□□□□ -1.89
VPS13C-208ENST00000559119 KRT6BP04259 564 aa3.25□□□□□ -1.89
VPS13C-208ENST00000559119 FAM200BP0CF97 657 aa3.25□□□□□ -1.89
VPS13C-208ENST00000559119 ADORA3P0DMS8 318 aa3.25□□□□□ -1.89
VPS13C-208ENST00000559119 ELK3P41970 407 aa3.25□□□□□ -1.89
VPS13C-208ENST00000559119 KRT6CP48668 564 aa3.25□□□□□ -1.89
VPS13C-208ENST00000559119 ACY1Q03154 408 aa3.25□□□□□ -1.89
VPS13C-208ENST00000559119 ATP1A1-AS1Q5TC04 95 aa3.25□□□□□ -1.89
VPS13C-208ENST00000559119 RCOR2Q8IZ40 523 aa3.25□□□□□ -1.89
VPS13C-208ENST00000559119 PRR22Q8IZ63 422 aa3.25□□□□□ -1.89
VPS13C-208ENST00000559119 AVL9Q8NBF6 648 aa3.25□□□□□ -1.89
VPS13C-208ENST00000559119 OR4Q3Q8NH05 313 aa3.25□□□□□ -1.89
VPS13C-208ENST00000559119 RPLP0P6Q8NHW5 317 aa3.25□□□□□ -1.89
VPS13C-208ENST00000559119 BADQ92934 168 aa3.25□□□□□ -1.89
VPS13C-208ENST00000559119 ZNF622Q969S3 477 aaKnown RBP eCLIP3.25□□□□□ -1.89
VPS13C-208ENST00000559119 TIGD1Q96MW7 591 aa3.25□□□□□ -1.89
VPS13C-208ENST00000559119 BTBD9Q96Q07 612 aa3.25□□□□□ -1.89
VPS13C-208ENST00000559119 APOL2Q9BQE5 337 aa3.25□□□□□ -1.89
VPS13C-208ENST00000559119 TEX12Q9BXU0 123 aa3.25□□□□□ -1.89
VPS13C-208ENST00000559119 TEX13BQ9BXU2 312 aa3.25□□□□□ -1.89
VPS13C-208ENST00000559119 PDFQ9HBH1 243 aa3.25□□□□□ -1.89
VPS13C-208ENST00000559119 CLEC5AQ9NY25 188 aa3.25□□□□□ -1.89
VPS13C-208ENST00000559119 CPSF3Q9UKF6 684 aaKnown RBP3.25□□□□□ -1.89
VPS13C-208ENST00000559119 SLC6A5Q9Y345 797 aa3.25□□□□□ -1.89
VPS13C-208ENST00000559119 RPS6KL1Q9Y6S9 549 aa3.25□□□□□ -1.89
VPS13C-208ENST00000559119 SNX3O60493 162 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms