RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 MPP1Q00013 466 aa12.04□□□□□ -0.48
SHMT2-230ENST00000557427 POU4F1Q01851 419 aa12.04□□□□□ -0.48
SHMT2-230ENST00000557427 CTBP1Q13363 440 aa12.04□□□□□ -0.48
SHMT2-230ENST00000557427 USP10Q14694 798 aaKnown RBP12.04□□□□□ -0.48
SHMT2-230ENST00000557427 GPR33Q49SQ1 333 aa12.04□□□□□ -0.48
SHMT2-230ENST00000557427 CES4AQ5XG92 561 aa12.04□□□□□ -0.48
SHMT2-230ENST00000557427 ZNF470Q6ECI4 717 aa12.04□□□□□ -0.48
SHMT2-230ENST00000557427 CUZD1Q86UP6 607 aa12.04□□□□□ -0.48
SHMT2-230ENST00000557427 DENND6AQ8IWF6 608 aa12.04□□□□□ -0.48
SHMT2-230ENST00000557427 PLD6Q8N2A8 252 aaKnown RBP12.04□□□□□ -0.48
SHMT2-230ENST00000557427 ZBTB2Q8N680 514 aa12.04□□□□□ -0.48
SHMT2-230ENST00000557427 LILRA3Q8N6C8 439 aaPredicted RBP12.04□□□□□ -0.48
SHMT2-230ENST00000557427 SPDYE1Q8NFV5 336 aaPredicted RBP12.04□□□□□ -0.48
SHMT2-230ENST00000557427 OR13J1Q8NGT2 312 aa12.04□□□□□ -0.48
SHMT2-230ENST00000557427 OR6Y1Q8NGX8 325 aa12.04□□□□□ -0.48
SHMT2-230ENST00000557427 OR2L2Q8NH16 312 aa12.04□□□□□ -0.48
SHMT2-230ENST00000557427 PPP1R14CQ8TAE6 165 aa12.04□□□□□ -0.48
SHMT2-230ENST00000557427 STYXQ8WUJ0 223 aa12.04□□□□□ -0.48
SHMT2-230ENST00000557427 SREK1Q8WXA9 508 aaKnown RBP12.04□□□□□ -0.48
SHMT2-230ENST00000557427 ERP27Q96DN0 273 aa12.04□□□□□ -0.48
SHMT2-230ENST00000557427 TMEM120AQ9BXJ8 343 aa12.04□□□□□ -0.48
SHMT2-230ENST00000557427 CAB39LQ9H9S4 337 aa12.04□□□□□ -0.48
SHMT2-230ENST00000557427 UCK1Q9HA47 277 aa12.04□□□□□ -0.48
SHMT2-230ENST00000557427 SAR1AQ9NR31 198 aa12.04□□□□□ -0.48
SHMT2-230ENST00000557427 ZDHHC3Q9NYG2 299 aa12.04□□□□□ -0.48
SHMT2-230ENST00000557427 C5AR2Q9P296 337 aa12.04□□□□□ -0.48
SHMT2-230ENST00000557427 ACSL5Q9ULC5 683 aa12.04□□□□□ -0.48
SHMT2-230ENST00000557427 PCDHGA10Q9Y5H3 936 aa12.04□□□□□ -0.48
SHMT2-230ENST00000557427 A0A087X1B8 175 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 CCDC162PA2VCL2 907 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 TMEM114B3SHH9 223 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 SGTAO43765 313 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 PRICKLE3O43900 615 aaPredicted RBP12.03□□□□□ -0.48
SHMT2-230ENST00000557427 HNRNPCL1O60812 293 aaKnown RBP12.03□□□□□ -0.48
SHMT2-230ENST00000557427 RASSF9O75901 435 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 UNC5CO95185 931 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 SLC35E2BP0CK96 405 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 STMN1P16949 149 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 NELFEP18615 380 aaKnown RBP12.03□□□□□ -0.48
SHMT2-230ENST00000557427 PSMA3P25788 255 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 GLRBP48167 497 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 KPNA2P52292 529 aaKnown RBP12.03□□□□□ -0.48
SHMT2-230ENST00000557427 RAB10P61026 200 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 CACNG1Q06432 222 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 DMPKQ09013 629 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 ART3Q13508 389 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 KRT33BQ14525 404 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 KCNAB1Q14722 419 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 TSNAXIP1Q2TAA8 658 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 VWA5B1Q5TIE3 1220 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 FAM91A1Q658Y4 838 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 IRGCQ6NXR0 463 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 IGFL3Q6UXB1 125 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 FAM92BQ6ZTR7 304 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 RAPH1Q70E73 1250 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 PRSS42Q7Z5A4 293 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 FJX1Q86VR8 437 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 PIANPQ8IYJ0 282 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 CLDN19Q8N6F1 224 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 SLC38A9Q8NBW4 561 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 ACVR1CQ8NER5 493 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 GPR150Q8NGU9 434 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 HEXDCQ8WVB3 486 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 RSC1A1Q92681 617 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 HDAC10Q969S8 669 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 C12orf66Q96MD2 445 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 TUBB6Q9BUF5 446 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 ILKAPQ9H0C8 392 aaPredicted RBP12.03□□□□□ -0.48
SHMT2-230ENST00000557427 NMRAL1Q9HBL8 299 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 ZBTB20Q9HC78 741 aaPredicted RBP12.03□□□□□ -0.48
SHMT2-230ENST00000557427 POT1Q9NUX5 634 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 ZFP69BQ9UJL9 534 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 DCTN4Q9UJW0 460 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 CORO1CQ9ULV4 474 aaPredicted RBP12.03□□□□□ -0.48
SHMT2-230ENST00000557427 ACOT9Q9Y305 439 aa12.03□□□□□ -0.48
SHMT2-230ENST00000557427 KLF2Q9Y5W3 355 aaPredicted RBP12.03□□□□□ -0.48
SHMT2-230ENST00000557427 A0A0G2JND7 137 aa12.02□□□□□ -0.49
SHMT2-230ENST00000557427 G3V2L1 256 aa12.02□□□□□ -0.49
SHMT2-230ENST00000557427 STSP08842 583 aa12.02□□□□□ -0.49
SHMT2-230ENST00000557427 MYL2P10916 166 aa12.02□□□□□ -0.49
SHMT2-230ENST00000557427 OGNP20774 298 aaKnown RBP12.02□□□□□ -0.49
SHMT2-230ENST00000557427 ACRV1P26436 265 aa12.02□□□□□ -0.49
SHMT2-230ENST00000557427 SLC1A6P48664 564 aa12.02□□□□□ -0.49
SHMT2-230ENST00000557427 PRAMEP78395 509 aa12.02□□□□□ -0.49
SHMT2-230ENST00000557427 IRF9Q00978 393 aa12.02□□□□□ -0.49
SHMT2-230ENST00000557427 PLCL1Q15111 1095 aa12.02□□□□□ -0.49
SHMT2-230ENST00000557427 BCL7AQ4VC05 210 aa12.02□□□□□ -0.49
SHMT2-230ENST00000557427 CACHD1Q5VU97 1274 aa12.02□□□□□ -0.49
SHMT2-230ENST00000557427 DUS1LQ6P1R4 473 aaKnown RBP12.02□□□□□ -0.49
SHMT2-230ENST00000557427 ZYG11AQ6WRX3 759 aa12.02□□□□□ -0.49
SHMT2-230ENST00000557427 CERS6Q6ZMG9 384 aa12.02□□□□□ -0.49
SHMT2-230ENST00000557427 Q6ZS92 163 aa12.02□□□□□ -0.49
SHMT2-230ENST00000557427 MED25Q71SY5 747 aa12.02□□□□□ -0.49
SHMT2-230ENST00000557427 ASRGL1Q7L266 308 aa12.02□□□□□ -0.49
SHMT2-230ENST00000557427 CILP2Q8IUL8 1156 aa12.02□□□□□ -0.49
SHMT2-230ENST00000557427 C10orf107Q8IVU9 208 aa12.02□□□□□ -0.49
SHMT2-230ENST00000557427 RBM12BQ8IXT5 1001 aaKnown RBP12.02□□□□□ -0.49
SHMT2-230ENST00000557427 TMEM102Q8N9M5 508 aaPredicted RBP12.02□□□□□ -0.49
SHMT2-230ENST00000557427 PHC3Q8NDX5 983 aa12.02□□□□□ -0.49
SHMT2-230ENST00000557427 OR6P1Q8NGX9 317 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms