RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 CAPS2Q9BXY5 557 aa12.28□□□□□ -0.44
SHMT2-227ENST00000557269 CHRNA10Q9GZZ6 450 aa12.28□□□□□ -0.44
SHMT2-227ENST00000557269 SPRTNQ9H040 489 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-227ENST00000557269 PELI2Q9HAT8 420 aa12.28□□□□□ -0.44
SHMT2-227ENST00000557269 TNFRSF12AQ9NP84 129 aa12.28□□□□□ -0.44
SHMT2-227ENST00000557269 FGF21Q9NSA1 209 aa12.28□□□□□ -0.44
SHMT2-227ENST00000557269 ANKMY1Q9P2S6 941 aa12.28□□□□□ -0.44
SHMT2-227ENST00000557269 PISDQ9UG56 409 aa12.28□□□□□ -0.44
SHMT2-227ENST00000557269 MID2Q9UJV3 735 aa12.28□□□□□ -0.44
SHMT2-227ENST00000557269 ZNF490Q9ULM2 529 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-227ENST00000557269 RNF11Q9Y3C5 154 aa12.28□□□□□ -0.44
SHMT2-227ENST00000557269 SPTBN4Q9H254 2564 aa12.27□□□□□ -0.44
SHMT2-227ENST00000557269 KCNE1BA0A087WTH5 132 aa12.27□□□□□ -0.45
SHMT2-227ENST00000557269 B4E171 279 aa12.27□□□□□ -0.45
SHMT2-227ENST00000557269 H0YGG7 62 aa12.27□□□□□ -0.45
SHMT2-227ENST00000557269 OR1F1O43749 312 aa12.27□□□□□ -0.45
SHMT2-227ENST00000557269 TIAF1O95411 115 aa12.27□□□□□ -0.45
SHMT2-227ENST00000557269 EZRP15311 586 aaKnown RBP12.27□□□□□ -0.45
SHMT2-227ENST00000557269 TSPAN7P41732 249 aa12.27□□□□□ -0.45
SHMT2-227ENST00000557269 CASP2P42575 452 aa12.27□□□□□ -0.45
SHMT2-227ENST00000557269 MAPK10P53779 464 aa12.27□□□□□ -0.45
SHMT2-227ENST00000557269 ARF3P61204 181 aaPredicted RBP12.27□□□□□ -0.45
SHMT2-227ENST00000557269 SNRPNP63162 240 aaKnown RBP12.27□□□□□ -0.45
SHMT2-227ENST00000557269 IRF8Q02556 426 aa12.27□□□□□ -0.45
SHMT2-227ENST00000557269 FOXM1Q08050 763 aa12.27□□□□□ -0.45
SHMT2-227ENST00000557269 TUBB3Q13509 450 aa12.27□□□□□ -0.45
SHMT2-227ENST00000557269 RBBP7Q16576 425 aa12.27□□□□□ -0.45
SHMT2-227ENST00000557269 TMTC4Q5T4D3 741 aa12.27□□□□□ -0.45
SHMT2-227ENST00000557269 LETMD1Q6P1Q0 360 aa12.27□□□□□ -0.45
SHMT2-227ENST00000557269 FRMD7Q6ZUT3 714 aa12.27□□□□□ -0.45
SHMT2-227ENST00000557269 VN1R4Q7Z5H5 301 aa12.27□□□□□ -0.45
SHMT2-227ENST00000557269 SYVN1Q86TM6 617 aa12.27□□□□□ -0.45
SHMT2-227ENST00000557269 NUDCD3Q8IVD9 361 aa12.27□□□□□ -0.45
SHMT2-227ENST00000557269 LSMEM2Q8N112 164 aa12.27□□□□□ -0.45
SHMT2-227ENST00000557269 ANKRD53Q8N9V6 530 aa12.27□□□□□ -0.45
SHMT2-227ENST00000557269 OR4F6Q8NGB9 312 aa12.27□□□□□ -0.45
SHMT2-227ENST00000557269 WDR36Q8NI36 951 aaKnown RBP12.27□□□□□ -0.45
SHMT2-227ENST00000557269 PPP4R1Q8TF05 950 aa12.27□□□□□ -0.45
SHMT2-227ENST00000557269 PTCD3Q96EY7 689 aaKnown RBP12.27□□□□□ -0.45
SHMT2-227ENST00000557269 ZFYVE21Q9BQ24 234 aa12.27□□□□□ -0.45
SHMT2-227ENST00000557269 MACROD1Q9BQ69 325 aa12.27□□□□□ -0.45
SHMT2-227ENST00000557269 SHCBP1LQ9BZQ2 653 aa12.27□□□□□ -0.45
SHMT2-227ENST00000557269 EHD1Q9H4M9 534 aa12.27□□□□□ -0.45
SHMT2-227ENST00000557269 ZNF395Q9H8N7 513 aaPredicted RBP12.27□□□□□ -0.45
SHMT2-227ENST00000557269 ACTR8Q9H981 624 aa12.27□□□□□ -0.45
SHMT2-227ENST00000557269 STARD5Q9NSY2 213 aa12.27□□□□□ -0.45
SHMT2-227ENST00000557269 PLCL2Q9UPR0 1127 aa12.27□□□□□ -0.45
SHMT2-227ENST00000557269 TRBC2A0A5B9 178 aa12.26□□□□□ -0.45
SHMT2-227ENST00000557269 TMEM150CB9EJG8 249 aa12.26□□□□□ -0.45
SHMT2-227ENST00000557269 BIRC5O15392 142 aa12.26□□□□□ -0.45
SHMT2-227ENST00000557269 P2RX6O15547 441 aa12.26□□□□□ -0.45
SHMT2-227ENST00000557269 ITM2AO43736 263 aa12.26□□□□□ -0.45
SHMT2-227ENST00000557269 H2AFYO75367 372 aaKnown RBP12.26□□□□□ -0.45
SHMT2-227ENST00000557269 OR4F21O95013 312 aa12.26□□□□□ -0.45
SHMT2-227ENST00000557269 CHRNGP07510 517 aa12.26□□□□□ -0.45
SHMT2-227ENST00000557269 MSL3P1P0C860 447 aa12.26□□□□□ -0.45
SHMT2-227ENST00000557269 BGNP21810 368 aa12.26□□□□□ -0.45
SHMT2-227ENST00000557269 SCTRP47872 440 aa12.26□□□□□ -0.45
SHMT2-227ENST00000557269 PIK3CGP48736 1102 aa12.26□□□□□ -0.45
SHMT2-227ENST00000557269 VSX2P58304 361 aaPredicted RBP12.26□□□□□ -0.45
SHMT2-227ENST00000557269 PPP2R2AP63151 447 aa12.26□□□□□ -0.45
SHMT2-227ENST00000557269 GABREP78334 506 aa12.26□□□□□ -0.45
SHMT2-227ENST00000557269 RELAQ04206 551 aa12.26□□□□□ -0.45
SHMT2-227ENST00000557269 NAA25Q14CX7 972 aa12.26□□□□□ -0.45
SHMT2-227ENST00000557269 RBBP5Q15291 538 aaKnown RBP12.26□□□□□ -0.45
SHMT2-227ENST00000557269 CHI3L2Q15782 390 aa12.26□□□□□ -0.45
SHMT2-227ENST00000557269 TBCCQ15814 346 aa12.26□□□□□ -0.45
SHMT2-227ENST00000557269 ZC3H12BQ5HYM0 836 aaKnown RBP12.26□□□□□ -0.45
SHMT2-227ENST00000557269 HHATQ5VTY9 493 aa12.26□□□□□ -0.45
SHMT2-227ENST00000557269 GRHL2Q6ISB3 625 aa12.26□□□□□ -0.45
SHMT2-227ENST00000557269 VN1R5Q7Z5H4 357 aa12.26□□□□□ -0.45
SHMT2-227ENST00000557269 L3MBTL4Q8NA19 623 aa12.26□□□□□ -0.45
SHMT2-227ENST00000557269 MFSD9Q8NBP5 474 aa12.26□□□□□ -0.45
SHMT2-227ENST00000557269 ATP6V1E2Q96A05 226 aa12.26□□□□□ -0.45
SHMT2-227ENST00000557269 ZNF285Q96NJ3 590 aa12.26□□□□□ -0.45
SHMT2-227ENST00000557269 AIF1LQ9BQI0 150 aa12.26□□□□□ -0.45
SHMT2-227ENST00000557269 NTMT1Q9BV86 223 aa12.26□□□□□ -0.45
SHMT2-227ENST00000557269 SARGQ9BW04 601 aa12.26□□□□□ -0.45
SHMT2-227ENST00000557269 FBXO8Q9NRD0 319 aa12.26□□□□□ -0.45
SHMT2-227ENST00000557269 SLC39A1Q9NY26 324 aa12.26□□□□□ -0.45
SHMT2-227ENST00000557269 NKIRAS1Q9NYS0 192 aa12.26□□□□□ -0.45
SHMT2-227ENST00000557269 AKAP7Q9P0M2 348 aaPredicted RBP12.26□□□□□ -0.45
SHMT2-227ENST00000557269 PCDHGA4Q9Y5G9 962 aa12.26□□□□□ -0.45
SHMT2-227ENST00000557269 HEATR5BQ9P2D3 2071 aa12.26□□□□□ -0.45
SHMT2-227ENST00000557269 TRABD2BA6NFA1 517 aa12.25□□□□□ -0.45
SHMT2-227ENST00000557269 C9orf172C9J069 976 aa12.25□□□□□ -0.45
SHMT2-227ENST00000557269 MAP3K7O43318 606 aa12.25□□□□□ -0.45
SHMT2-227ENST00000557269 TNFSF15O95150 251 aa12.25□□□□□ -0.45
SHMT2-227ENST00000557269 MED26O95402 600 aa12.25□□□□□ -0.45
SHMT2-227ENST00000557269 CLDN9O95484 217 aa12.25□□□□□ -0.45
SHMT2-227ENST00000557269 TBX6O95947 436 aaPredicted RBP12.25□□□□□ -0.45
SHMT2-227ENST00000557269 OTCP00480 354 aa12.25□□□□□ -0.45
SHMT2-227ENST00000557269 EIF2S1P05198 315 aaKnown RBP12.25□□□□□ -0.45
SHMT2-227ENST00000557269 ADRB1P08588 477 aa12.25□□□□□ -0.45
SHMT2-227ENST00000557269 JMJD7P0C870 316 aa12.25□□□□□ -0.45
SHMT2-227ENST00000557269 FGF5P12034 268 aa12.25□□□□□ -0.45
SHMT2-227ENST00000557269 CHN1P15882 459 aa12.25□□□□□ -0.45
SHMT2-227ENST00000557269 ZNF28P17035 718 aa12.25□□□□□ -0.45
SHMT2-227ENST00000557269 CCNG1P51959 295 aa12.25□□□□□ -0.45
SHMT2-227ENST00000557269 FOXA1P55317 472 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms