RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	NMUR1	Q9HB89	426 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	MIOS	Q9NXC5	875 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	PCDHA9	Q9Y5H5	950 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005		A0A096LPI6	279 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	TRBC2	A0A5B9	178 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	UBE2QL1	A1L167	161 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	MTX2	O75431	263 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	ADAM15	Q13444	863 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	DSC3	Q14574	896 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	SUZ12	Q15022	739 aa	Known RBP	4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	NFE2	Q16621	373 aa	Predicted RBP	4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	FBXL22	Q6P050	247 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	MSANTD2	Q6P1R3	559 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	B3GNT9	Q6UX72	402 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	MACC1	Q6ZN28	852 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	TRIM48	Q8IWZ4	208 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	CRYBG2	Q8N1P7	616 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	KLHL36	Q8N4N3	616 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	OXR1	Q8N573	874 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	MTMR14	Q8NCE2	650 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	C11orf65	Q8NCR3	313 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	RAET1E	Q8TD07	263 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	GPR151	Q8TDV0	419 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	NUDT8	Q8WV74	236 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	TEFM	Q96QE5	360 aa	Known RBP	4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	PTPN18	Q99952	460 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	UCK2	Q9BZX2	261 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	GPN2	Q9H9Y4	310 aa	Predicted RBP	4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	POPDC3	Q9HBV1	291 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	BRD7	Q9NPI1	651 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	INIP	Q9NRY2	104 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	MTMR10	Q9NXD2	777 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	GULP1	Q9UBP9	304 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	ZNF282	Q9UDV7	671 aa	Predicted RBP	4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	OARD1	Q9Y530	152 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	TMEM221	A6NGB7	291 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005		H3BSH0	61 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	PCDH7	O60245	1069 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	ACSL4	O60488	711 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	SULT1C4	O75897	302 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	DHFR	P00374	187 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	RLN1	P04808	185 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	ITGAM	P11215	1152 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	PRPS2	P11908	318 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	CRHBP	P24387	322 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	SCNN1A	P37088	669 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	SMIM11A	P58511	58 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	ERVPABLB-1	P60509	514 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	DEFA5	Q01523	94 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	PSAPL1	Q6NUJ1	521 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	RETSAT	Q6NUM9	610 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	PRSS55	Q6UWB4	352 aa	Predicted RBP	4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	SNX20	Q7Z614	316 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	THOC6	Q86W42	341 aa	Known RBP	4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	PHC2	Q8IXK0	858 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	GPC2	Q8N158	579 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	PAPD5	Q8NDF8	572 aa	Known RBP	4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	OR10H4	Q8NGA5	316 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	CHPT1	Q8WUD6	406 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	MAL2	Q969L2	176 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	CMTM7	Q96FZ5	175 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	PHOX2B	Q99453	314 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	ANKRA2	Q9H9E1	313 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	HSFX1	Q9UBD0	423 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	PCTP	Q9UKL6	214 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	STUB1	Q9UNE7	303 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	RPL36	Q9Y3U8	105 aa	Known RBP	4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	PCDHB14	Q9Y5E9	798 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	ABHD14A-ACY1	A0A1B0GW23	586 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	PCDH8	O95206	1070 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	ZNF26	P17031	533 aa	Predicted RBP	4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	HOXB6	P17509	224 aa	Known RBP	4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	MAGEA6	P43360	314 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	AVPR1B	P47901	424 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	ALDH3B2	P48448	385 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	SLC9A3	P48764	834 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	MAN2A2	P49641	1150 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	RACK1	P63244	317 aa	Known RBP	4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	SLC9A5	Q14940	896 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	CHRNA6	Q15825	494 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	EEF1AKMT2	Q5JPI9	291 aa	Known RBP	4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	FAM92B	Q6ZTR7	304 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	LARP4	Q71RC2	724 aa	Known RBP eCLIP	4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	ISCA2	Q86U28	154 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	YAF2	Q8IY57	180 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	KRT78	Q8N1N4	520 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	MEIOB	Q8N635	442 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	OR52B6	Q8NGF0	335 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	IGSF8	Q969P0	613 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	MAEL	Q96JY0	434 aa	Known RBP	4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	DPCD	Q9BVM2	203 aa	Predicted RBP	4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	SMOC2	Q9H3U7	446 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	NSUN3	Q9H649	340 aa	Known RBP	4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	LTB4R2	Q9NPC1	389 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	MRPL15	Q9P015	296 aa	Known RBP	4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	SLC22A14	Q9Y267	594 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	B3GNT3	Q9Y2A9	372 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	PCDHGB6	Q9Y5F9	930 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	SLX4	Q8IY92	1834 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	COL2A1	P02458	1487 aa	Predicted RBP	4.84	□□□□□ -1.64

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