RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 CACNA2D3Q8IZS8 1091 aa16.72■□□□□ 0.27
SHMT2-225ENST00000556798 TMEM151AQ8N4L1 468 aa16.72■□□□□ 0.27
SHMT2-225ENST00000556798 ZNF740Q8NDX6 193 aa16.72■□□□□ 0.27
SHMT2-225ENST00000556798 NKD1Q969G9 470 aa16.72■□□□□ 0.27
SHMT2-225ENST00000556798 PHF21BQ96EK2 531 aa16.72■□□□□ 0.27
SHMT2-225ENST00000556798 ZNF285Q96NJ3 590 aa16.72■□□□□ 0.27
SHMT2-225ENST00000556798 TMEM109Q9BVC6 243 aa16.72■□□□□ 0.27
SHMT2-225ENST00000556798 OPTCQ9UBM4 332 aa16.72■□□□□ 0.27
SHMT2-225ENST00000556798 K7EPI3 171 aa16.71■□□□□ 0.27
SHMT2-225ENST00000556798 RRP8O43159 456 aaKnown RBP16.71■□□□□ 0.27
SHMT2-225ENST00000556798 LCMT2O60294 686 aaKnown RBP16.71■□□□□ 0.27
SHMT2-225ENST00000556798 SRPX2O60687 465 aaPredicted RBP16.71■□□□□ 0.27
SHMT2-225ENST00000556798 SMIM24O75264 130 aa16.71■□□□□ 0.27
SHMT2-225ENST00000556798 GLRA3O75311 464 aa16.71■□□□□ 0.27
SHMT2-225ENST00000556798 GSTA1P08263 222 aa16.71■□□□□ 0.27
SHMT2-225ENST00000556798 GNAZP19086 355 aa16.71■□□□□ 0.27
SHMT2-225ENST00000556798 ITPKBP27987 946 aa16.71■□□□□ 0.27
SHMT2-225ENST00000556798 GRK3P35626 688 aa16.71■□□□□ 0.27
SHMT2-225ENST00000556798 ATP1A2P50993 1020 aa16.71■□□□□ 0.27
SHMT2-225ENST00000556798 RPS15AP62244 130 aaKnown RBP16.71■□□□□ 0.27
SHMT2-225ENST00000556798 REEP5Q00765 189 aa16.71■□□□□ 0.27
SHMT2-225ENST00000556798 HKDC1Q2TB90 917 aa16.71■□□□□ 0.27
SHMT2-225ENST00000556798 TCTE1Q5JU00 501 aa16.71■□□□□ 0.27
SHMT2-225ENST00000556798 CEP85LQ5SZL2 805 aa16.71■□□□□ 0.27
SHMT2-225ENST00000556798 C1orf189Q5VU69 101 aa16.71■□□□□ 0.27
SHMT2-225ENST00000556798 TRABD2AQ86V40 505 aa16.71■□□□□ 0.27
SHMT2-225ENST00000556798 LCA5Q86VQ0 697 aa16.71■□□□□ 0.27
SHMT2-225ENST00000556798 SRRM1Q8IYB3 904 aaKnown RBP16.71■□□□□ 0.27
SHMT2-225ENST00000556798 IQCKQ8N0W5 287 aa16.71■□□□□ 0.27
SHMT2-225ENST00000556798 DTWD1Q8N5C7 304 aa16.71■□□□□ 0.27
SHMT2-225ENST00000556798 IL22RA1Q8N6P7 574 aa16.71■□□□□ 0.27
SHMT2-225ENST00000556798 CSNK1A1LQ8N752 337 aa16.71■□□□□ 0.27
SHMT2-225ENST00000556798 OR4K1Q8NGD4 311 aa16.71■□□□□ 0.27
SHMT2-225ENST00000556798 RERGQ96A58 199 aaPredicted RBP16.71■□□□□ 0.27
SHMT2-225ENST00000556798 AKIRIN1Q9H9L7 192 aaPredicted RBP16.71■□□□□ 0.27
SHMT2-225ENST00000556798 PELI2Q9HAT8 420 aa16.71■□□□□ 0.27
SHMT2-225ENST00000556798 GPRC5BQ9NZH0 403 aa16.71■□□□□ 0.27
SHMT2-225ENST00000556798 DHCR7Q9UBM7 475 aaKnown RBP16.71■□□□□ 0.27
SHMT2-225ENST00000556798 DCDC2Q9UHG0 476 aa16.71■□□□□ 0.27
SHMT2-225ENST00000556798 EMCNQ9ULC0 261 aa16.71■□□□□ 0.27
SHMT2-225ENST00000556798 PCDHGA4Q9Y5G9 962 aa16.71■□□□□ 0.27
SHMT2-225ENST00000556798 AP1M2Q9Y6Q5 423 aa16.71■□□□□ 0.27
SHMT2-225ENST00000556798 SRRM3A6NNA2 597 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-225ENST00000556798 COPEO14579 308 aa16.7■□□□□ 0.26
SHMT2-225ENST00000556798 CLGNO14967 610 aa16.7■□□□□ 0.26
SHMT2-225ENST00000556798 OR1F1O43749 312 aa16.7■□□□□ 0.26
SHMT2-225ENST00000556798 PRAMEF4O60810 478 aa16.7■□□□□ 0.26
SHMT2-225ENST00000556798 MED26O95402 600 aa16.7■□□□□ 0.26
SHMT2-225ENST00000556798 EEF1DP29692 281 aaKnown RBP16.7■□□□□ 0.26
SHMT2-225ENST00000556798 RORAP35398 523 aa16.7■□□□□ 0.26
SHMT2-225ENST00000556798 RELAQ04206 551 aa16.7■□□□□ 0.26
SHMT2-225ENST00000556798 MAP7Q14244 749 aa16.7■□□□□ 0.26
SHMT2-225ENST00000556798 GRM7Q14831 915 aa16.7■□□□□ 0.26
SHMT2-225ENST00000556798 PRAMEF9Q5VWM5 478 aa16.7■□□□□ 0.26
SHMT2-225ENST00000556798 FAM199XQ6PEV8 388 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-225ENST00000556798 LRRC69Q6ZNQ3 347 aa16.7■□□□□ 0.26
SHMT2-225ENST00000556798 SLCO4C1Q6ZQN7 724 aa16.7■□□□□ 0.26
SHMT2-225ENST00000556798 VN1R4Q7Z5H5 301 aa16.7■□□□□ 0.26
SHMT2-225ENST00000556798 ESX1Q8N693 406 aa16.7■□□□□ 0.26
SHMT2-225ENST00000556798 METTL27Q8N6F8 245 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-225ENST00000556798 TEX9Q8N6V9 391 aa16.7■□□□□ 0.26
SHMT2-225ENST00000556798 TTC29Q8NA56 475 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-225ENST00000556798 MYRIPQ8NFW9 859 aa16.7■□□□□ 0.26
SHMT2-225ENST00000556798 MR1Q95460 341 aa16.7■□□□□ 0.26
SHMT2-225ENST00000556798 MACROD1Q9BQ69 325 aa16.7■□□□□ 0.26
SHMT2-225ENST00000556798 AIF1LQ9BQI0 150 aa16.7■□□□□ 0.26
SHMT2-225ENST00000556798 NDC1Q9BTX1 674 aa16.7■□□□□ 0.26
SHMT2-225ENST00000556798 C12orf65Q9H3J6 166 aaKnown RBP16.7■□□□□ 0.26
SHMT2-225ENST00000556798 LHX9Q9NQ69 397 aa16.7■□□□□ 0.26
SHMT2-225ENST00000556798 RUVBL1Q9Y265 456 aaKnown RBP16.7■□□□□ 0.26
SHMT2-225ENST00000556798 LOC101059948A0A1B0GTJ6 334 aa16.69■□□□□ 0.26
SHMT2-225ENST00000556798 TRBC2A0A5B9 178 aa16.69■□□□□ 0.26
SHMT2-225ENST00000556798 HYKKA2RU49 373 aa16.69■□□□□ 0.26
SHMT2-225ENST00000556798 FITM1A5D6W6 292 aa16.69■□□□□ 0.26
SHMT2-225ENST00000556798 A8MT66 165 aa16.69■□□□□ 0.26
SHMT2-225ENST00000556798 CCNYL3P0C7X3 344 aa16.69■□□□□ 0.26
SHMT2-225ENST00000556798 C1GALT1C1LP0DN25 315 aa16.69■□□□□ 0.26
SHMT2-225ENST00000556798 STAT5AP42229 794 aa16.69■□□□□ 0.26
SHMT2-225ENST00000556798 GCGRP47871 477 aa16.69■□□□□ 0.26
SHMT2-225ENST00000556798 SLC18A2Q05940 514 aa16.69■□□□□ 0.26
SHMT2-225ENST00000556798 SLBPQ14493 270 aaKnown RBP eCLIP16.69■□□□□ 0.26
SHMT2-225ENST00000556798 PCBP2Q15366 365 aaKnown RBP eCLIP16.69■□□□□ 0.26
SHMT2-225ENST00000556798 PRTGQ2VWP7 1150 aa16.69■□□□□ 0.26
SHMT2-225ENST00000556798 XKR6Q5GH73 641 aa16.69■□□□□ 0.26
SHMT2-225ENST00000556798 MANEAQ5SRI9 462 aa16.69■□□□□ 0.26
SHMT2-225ENST00000556798 ATG9BQ674R7 924 aa16.69■□□□□ 0.26
SHMT2-225ENST00000556798 LCN10Q6JVE6 187 aa16.69■□□□□ 0.26
SHMT2-225ENST00000556798 RHBDD2Q6NTF9 364 aa16.69■□□□□ 0.26
SHMT2-225ENST00000556798 TTLL10Q6ZVT0 673 aa16.69■□□□□ 0.26
SHMT2-225ENST00000556798 DSELQ8IZU8 1212 aa16.69■□□□□ 0.26
SHMT2-225ENST00000556798 MFSD9Q8NBP5 474 aa16.69■□□□□ 0.26
SHMT2-225ENST00000556798 HNRNPLLQ8WVV9 542 aaKnown RBP16.69■□□□□ 0.26
SHMT2-225ENST00000556798 DPH1Q9BZG8 443 aa16.69■□□□□ 0.26
SHMT2-225ENST00000556798 CENPHQ9H3R5 247 aa16.69■□□□□ 0.26
SHMT2-225ENST00000556798 ACSS2Q9NR19 701 aa16.69■□□□□ 0.26
SHMT2-225ENST00000556798 CUTCQ9NTM9 273 aa16.69■□□□□ 0.26
SHMT2-225ENST00000556798 TXLNGQ9NUQ3 528 aa16.69■□□□□ 0.26
SHMT2-225ENST00000556798 GEMIN8Q9NWZ8 242 aaKnown RBP16.69■□□□□ 0.26
SHMT2-225ENST00000556798 NDOR1Q9UHB4 597 aa16.69■□□□□ 0.26
SHMT2-225ENST00000556798 TMCO1Q9UM00 188 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms