RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 KCNE1BA0A087WTH5 132 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 TRBC2A0A5B9 178 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 FEZF1A0PJY2 475 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 PMS2P1A4D2B8 440 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 PLD2O14939 933 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 OR1F1O43749 312 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 NPHS1O60500 1241 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 CLDN9O95484 217 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 JMJD7P0C870 316 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 CD22P20273 847 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 NR1D1P20393 614 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 BGNP21810 368 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 ARL1P40616 181 aaPredicted RBP11.72□□□□□ -0.53
SHMT2-209ENST00000553949 BCL6P41182 706 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 CCR10P46092 362 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 RPS15AP62244 130 aaKnown RBP11.72□□□□□ -0.53
SHMT2-209ENST00000553949 MC2RQ01718 297 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 FOXM1Q08050 763 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 TRAF3Q13114 568 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 TUBB3Q13509 450 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 LAPTM5Q13571 262 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 CHI3L2Q15782 390 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 C3orf38Q5JPI3 329 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 LIPJQ5W064 366 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 FRMPD2BQ6IN97 320 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 ZCCHC23Q6ZST2 131 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 MYLK4Q86YV6 388 aaPredicted RBP11.72□□□□□ -0.53
SHMT2-209ENST00000553949 KRT78Q8N1N4 520 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 TBC1D19Q8N5T2 526 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 L3MBTL4Q8NA19 623 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 MFSD9Q8NBP5 474 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 ZNF740Q8NDX6 193 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 OR6Y1Q8NGX8 325 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 N4BP2L2Q92802 583 aaPredicted RBP11.72□□□□□ -0.53
SHMT2-209ENST00000553949 THAP11Q96EK4 314 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 CNDP1Q96KN2 507 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 OR2A5Q96R48 311 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 ZNF382Q96SR6 550 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 NTMT1Q9BV86 223 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 SARGQ9BW04 601 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 PITHD1Q9GZP4 211 aaPredicted RBP11.72□□□□□ -0.53
SHMT2-209ENST00000553949 SYNPO2LQ9H987 977 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 FANCEQ9HB96 536 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 FGF21Q9NSA1 209 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 STK38LQ9Y2H1 464 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 RNF11Q9Y3C5 154 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 PCDHGA4Q9Y5G9 962 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 ANKRD12Q6UB98 2062 aa11.72□□□□□ -0.53
SHMT2-209ENST00000553949 LOC105369274A0A096LPK9 316 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 LOC102723532A0A0G2JNH3 316 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 A0A1B0GTL3 188 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 TMEM150CB9EJG8 249 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 H0YGG7 62 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 UBFD1O14562 309 aaKnown RBP11.71□□□□□ -0.53
SHMT2-209ENST00000553949 POLR1CO15160 346 aaPredicted RBP11.71□□□□□ -0.53
SHMT2-209ENST00000553949 LCMT2O60294 686 aaKnown RBP11.71□□□□□ -0.53
SHMT2-209ENST00000553949 SRPX2O60687 465 aaPredicted RBP11.71□□□□□ -0.53
SHMT2-209ENST00000553949 CTSBP07858 339 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 NEFHP12036 1026 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 CHN1P15882 459 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 ITIH1P19827 911 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 SERPINB5P36952 375 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 ETV5P41161 510 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 HNF4AP41235 474 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 SCTRP47872 440 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 ERVPABLB-1P60509 514 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 ARF3P61204 181 aaPredicted RBP11.71□□□□□ -0.53
SHMT2-209ENST00000553949 IL11RAQ14626 422 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 RBBP5Q15291 538 aaKnown RBP11.71□□□□□ -0.53
SHMT2-209ENST00000553949 HIST2H2ACQ16777 129 aaPredicted RBP11.71□□□□□ -0.53
SHMT2-209ENST00000553949 GGTA1PQ4G0N0 100 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 HIST2H2AA3Q6FI13 130 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 GRHL2Q6ISB3 625 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 LETMD1Q6P1Q0 360 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 MED27Q6P2C8 311 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 CYB5D1Q6P9G0 228 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 FOXR1Q6PIV2 292 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 TMIGD1Q6UXZ0 262 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 GPRIN3Q6ZVF9 776 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 MILR1Q7Z6M3 343 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 SYVN1Q86TM6 617 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 BPHLQ86WA6 291 aaPredicted RBP11.71□□□□□ -0.53
SHMT2-209ENST00000553949 OR4N4Q8N0Y3 316 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 OR4F6Q8NGB9 312 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 OR1L3Q8NH93 324 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 PPP1R14CQ8TAE6 165 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 AGAP11Q8TF27 550 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 UBE2E3Q969T4 207 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 RERGQ96A58 199 aaPredicted RBP11.71□□□□□ -0.53
SHMT2-209ENST00000553949 ZNF501Q96CX3 271 aaPredicted RBP11.71□□□□□ -0.53
SHMT2-209ENST00000553949 PRR11Q96HE9 360 aaPredicted RBP11.71□□□□□ -0.53
SHMT2-209ENST00000553949 MAGEB10Q96LZ2 347 aaPredicted RBP11.71□□□□□ -0.53
SHMT2-209ENST00000553949 ZNF285Q96NJ3 590 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 TRMOQ9BU70 441 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 DRC3Q9H069 523 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 NT5DC2Q9H857 520 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 FBXO8Q9NRD0 319 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 SLC39A1Q9NY26 324 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 PISDQ9UG56 409 aa11.71□□□□□ -0.53
SHMT2-209ENST00000553949 KLK13Q9UKR3 277 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms