RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 FLT3LGP49771 235 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 CLCN7P51798 805 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 GNG2P59768 71 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 DAB2P98082 770 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 HYAL2Q12891 473 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 TSTQ16762 297 aaKnown RBP4.7□□□□□ -1.66
LIMA1-214ENST00000552783 OR4F3Q6IEY1 312 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 TUBA3EQ6PEY2 450 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 GLT6D1Q7Z4J2 308 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 PTOV1Q86YD1 416 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 ZNF280BQ86YH2 543 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 TEX26Q8N6G2 289 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 AMER2Q8N7J2 671 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 BMPERQ8N8U9 685 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 ULK4Q96C45 1275 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 FEVQ99581 238 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 APOL4Q9BPW4 351 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 ACBD6Q9BR61 282 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 BOCQ9BWV1 1114 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 GPR63Q9BZJ6 419 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 POLR1EQ9GZS1 481 aaKnown RBP4.7□□□□□ -1.66
LIMA1-214ENST00000552783 GABARAPL1Q9H0R8 117 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 SYTL2Q9HCH5 934 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 PRDM5Q9NQX1 630 aaPredicted RBP4.7□□□□□ -1.66
LIMA1-214ENST00000552783 AASDHPPTQ9NRN7 309 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 KIF17Q9P2E2 1029 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 CARD8Q9Y2G2 431 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 LYVE1Q9Y5Y7 322 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 GON4LQ3T8J9 2241 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 SPEGQ15772 3267 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 PRAMEF25A6NGN4 478 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 CLCA1A8K7I4 914 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 C12orf71A8MTZ7 269 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 TNFRSF10BO14763 440 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 SH3BGRLO75368 114 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 KCNK5O95279 499 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 FKBP9O95302 570 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 MED26O95402 600 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 SEMG1P04279 462 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 PKMP14618 531 aaKnown RBP4.7□□□□□ -1.66
LIMA1-214ENST00000552783 POU3F3P20264 500 aaPredicted RBP4.7□□□□□ -1.66
LIMA1-214ENST00000552783 DNAJA1P31689 397 aaKnown RBP4.7□□□□□ -1.66
LIMA1-214ENST00000552783 DDOSTP39656 456 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 IL2P60568 153 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 RPS24P62847 133 aaKnown RBP4.7□□□□□ -1.66
LIMA1-214ENST00000552783 MXD1Q05195 221 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 EFR3AQ14156 821 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 STARD3Q14849 445 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 NFE2Q16621 373 aaPredicted RBP4.7□□□□□ -1.66
LIMA1-214ENST00000552783 CPSF6Q16630 551 aaKnown RBP eCLIP4.7□□□□□ -1.66
LIMA1-214ENST00000552783 RFX4Q33E94 735 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 USP39Q53GS9 565 aaKnown RBP4.7□□□□□ -1.66
LIMA1-214ENST00000552783 SPANXN2Q5MJ10 180 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 PTRHD1Q6GMV3 140 aaKnown RBP4.7□□□□□ -1.66
LIMA1-214ENST00000552783 NADSYN1Q6IA69 706 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 FAHD1Q6P587 224 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 CD300LGQ6UXG3 332 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 EFL1Q7Z2Z2 1120 aaKnown RBP4.7□□□□□ -1.66
LIMA1-214ENST00000552783 BPHLQ86WA6 291 aaPredicted RBP4.7□□□□□ -1.66
LIMA1-214ENST00000552783 DENND1CQ8IV53 801 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 CLECL1Q8IZS7 167 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 DTX3Q8N9I9 347 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 SNAPC3Q92966 411 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 MS4A4AQ96JQ5 239 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 HRASLS5Q96KN8 279 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 PKMYT1Q99640 499 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 SLC30A2Q9BRI3 323 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 CNPPD1Q9BV87 410 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 ACPTQ9BZG2 426 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 RERGLQ9H628 205 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 MAGIXQ9H6Y5 334 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 POPDC3Q9HBV1 291 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 ABCB8Q9NUT2 735 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 GIMAP4Q9NUV9 329 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 ACOXLQ9NUZ1 547 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 DKK3Q9UBP4 350 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 CLEC2DQ9UHP7 191 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 TRMT6Q9UJA5 497 aaKnown RBP4.7□□□□□ -1.66
LIMA1-214ENST00000552783 BTBD3Q9Y2F9 522 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 PCDHB5Q9Y5E4 795 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 MN1Q10571 1320 aaPredicted RBP4.7□□□□□ -1.66
LIMA1-214ENST00000552783 GRXCR2A6NFK2 248 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 FAM220BPB1ANY3 271 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 FAM227AF5H4B4 570 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 J3KTA2 159 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 GCM2O75603 506 aaPredicted RBP4.7□□□□□ -1.66
LIMA1-214ENST00000552783 OPN1SWP03999 348 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 CKMT1AP12532 417 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 CTPS1P17812 591 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 EPORP19235 508 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 FPR1P21462 350 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 SDHBP21912 280 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 RRM2P31350 389 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 MC4RP32245 332 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 RPL9P32969 192 aaKnown RBP4.7□□□□□ -1.66
LIMA1-214ENST00000552783 KCNQ1P51787 676 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 CCL23P55773 120 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 PCBP1Q15365 356 aaKnown RBP eCLIP4.7□□□□□ -1.66
LIMA1-214ENST00000552783 MED22Q15528 200 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 TBCEQ15813 527 aaPredicted RBP4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms