RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 ARSFP54793 590 aa14.54□□□□□ -0.08
CUX1-214ENST00000550008 PTPN5P54829 565 aa14.54□□□□□ -0.08
CUX1-214ENST00000550008 ABHD18Q0P651 414 aa14.54□□□□□ -0.08
CUX1-214ENST00000550008 DCST1Q5T197 706 aa14.54□□□□□ -0.08
CUX1-214ENST00000550008 DDX59Q5T1V6 619 aaKnown RBP eCLIP14.54□□□□□ -0.088e-7■■■■■ 33
CUX1-214ENST00000550008 ZNF730Q6ZMV8 503 aa14.54□□□□□ -0.08
CUX1-214ENST00000550008 PLEKHM3Q6ZWE6 761 aa14.54□□□□□ -0.08
CUX1-214ENST00000550008 CAMKK1Q8N5S9 505 aa14.54□□□□□ -0.08
CUX1-214ENST00000550008 DPP10Q8N608 796 aa14.54□□□□□ -0.08
CUX1-214ENST00000550008 EGLN2Q96KS0 407 aa14.54□□□□□ -0.08
CUX1-214ENST00000550008 FZD3Q9NPG1 666 aa14.54□□□□□ -0.08
CUX1-214ENST00000550008 SDR39U1Q9NRG7 319 aaPredicted RBP14.54□□□□□ -0.08
CUX1-214ENST00000550008 MAP10Q9P2G4 905 aa14.54□□□□□ -0.08
CUX1-214ENST00000550008 LY75O60449 1722 aa14.54□□□□□ -0.08
CUX1-214ENST00000550008 XPNPEP2O43895 674 aa14.53□□□□□ -0.08
CUX1-214ENST00000550008 PRAMEF12O95522 483 aa14.53□□□□□ -0.08
CUX1-214ENST00000550008 CA3P07451 260 aa14.53□□□□□ -0.08
CUX1-214ENST00000550008 NCBP2P52298 156 aaKnown RBP eCLIP14.53□□□□□ -0.086e-7■■□□□ 13.5
CUX1-214ENST00000550008 SNAPC1Q16533 368 aa14.53□□□□□ -0.08
CUX1-214ENST00000550008 LARP4Q71RC2 724 aaKnown RBP eCLIP14.53□□□□□ -0.089e-6■■■■□ 21.5
CUX1-214ENST00000550008 OR9A1PQ8NGU1 263 aa14.53□□□□□ -0.08
CUX1-214ENST00000550008 MCFD2Q8NI22 146 aa14.53□□□□□ -0.08
CUX1-214ENST00000550008 FOXJ1Q92949 421 aa14.53□□□□□ -0.08
CUX1-214ENST00000550008 APIPQ96GX9 242 aa14.53□□□□□ -0.08
CUX1-214ENST00000550008 UBXN10Q96LJ8 280 aa14.53□□□□□ -0.08
CUX1-214ENST00000550008 C17orf62Q9BQA9 187 aa14.53□□□□□ -0.08
CUX1-214ENST00000550008 CCM2LQ9NUG4 571 aaPredicted RBP14.53□□□□□ -0.08
CUX1-214ENST00000550008 USP22Q9UPT9 525 aa14.53□□□□□ -0.08
CUX1-214ENST00000550008 MRPS7Q9Y2R9 242 aaKnown RBP14.53□□□□□ -0.08
CUX1-214ENST00000550008 ARFGEF1Q9Y6D6 1849 aa14.53□□□□□ -0.08
CUX1-214ENST00000550008 BNIP3Q12983 259 aa14.53□□□□□ -0.08
CUX1-214ENST00000550008 ENPP6Q6UWR7 440 aa14.53□□□□□ -0.08
CUX1-214ENST00000550008 TMEM207Q6UWW9 146 aa14.53□□□□□ -0.08
CUX1-214ENST00000550008 POC5Q8NA72 575 aa14.53□□□□□ -0.08
CUX1-214ENST00000550008 ZNF483Q8TF39 744 aaPredicted RBP14.53□□□□□ -0.08
CUX1-214ENST00000550008 NUDT8Q8WV74 236 aa14.53□□□□□ -0.08
CUX1-214ENST00000550008 SLC5A11Q8WWX8 675 aa14.53□□□□□ -0.08
CUX1-214ENST00000550008 C1QTNF1Q9BXJ1 281 aa14.53□□□□□ -0.08
CUX1-214ENST00000550008 PLGRKTQ9HBL7 147 aa14.53□□□□□ -0.08
CUX1-214ENST00000550008 PTPRZ1P23471 2315 aaPredicted RBP14.53□□□□□ -0.08
CUX1-214ENST00000550008 IGLON5A6NGN9 336 aa14.53□□□□□ -0.08
CUX1-214ENST00000550008 FADS2P1A8MWK0 482 aa14.53□□□□□ -0.08
CUX1-214ENST00000550008 NDUFS4O43181 175 aa14.53□□□□□ -0.08
CUX1-214ENST00000550008 FOXD2O60548 495 aaPredicted RBP14.53□□□□□ -0.08
CUX1-214ENST00000550008 CMPK1P30085 196 aa14.53□□□□□ -0.08
CUX1-214ENST00000550008 CPOXP36551 454 aa14.53□□□□□ -0.08
CUX1-214ENST00000550008 BMPR1AP36894 532 aa14.53□□□□□ -0.08
CUX1-214ENST00000550008 CCR8P51685 355 aa14.53□□□□□ -0.08
CUX1-214ENST00000550008 RPS26P62854 115 aaKnown RBP14.53□□□□□ -0.08
CUX1-214ENST00000550008 FOXM1Q08050 763 aa14.53□□□□□ -0.08
CUX1-214ENST00000550008 CEACAM20Q6UY09 585 aa14.53□□□□□ -0.08
CUX1-214ENST00000550008 HSD11B1LQ7Z5J1 315 aa14.53□□□□□ -0.08
CUX1-214ENST00000550008 NPAS3Q8IXF0 933 aa14.53□□□□□ -0.08
CUX1-214ENST00000550008 LGI4Q8N135 537 aa14.53□□□□□ -0.08
CUX1-214ENST00000550008 DNASE1L2Q92874 299 aa14.53□□□□□ -0.08
CUX1-214ENST00000550008 CMTM7Q96FZ5 175 aa14.53□□□□□ -0.08
CUX1-214ENST00000550008 MARCH7Q9H992 704 aa14.53□□□□□ -0.08
CUX1-214ENST00000550008 OR1A2Q9Y585 309 aa14.53□□□□□ -0.08
CUX1-214ENST00000550008 TRIP11Q15643 1979 aa14.53□□□□□ -0.08
CUX1-214ENST00000550008 H3BNX3 289 aa14.52□□□□□ -0.08
CUX1-214ENST00000550008 GNB5O14775 395 aa14.52□□□□□ -0.08
CUX1-214ENST00000550008 BMP7P18075 431 aa14.52□□□□□ -0.08
CUX1-214ENST00000550008 CDH3P22223 829 aa14.52□□□□□ -0.08
CUX1-214ENST00000550008 OXTRP30559 389 aa14.52□□□□□ -0.08
CUX1-214ENST00000550008 ATP4BP51164 291 aa14.52□□□□□ -0.08
CUX1-214ENST00000550008 TBPL1P62380 186 aa14.52□□□□□ -0.08
CUX1-214ENST00000550008 MXD1Q05195 221 aa14.52□□□□□ -0.08
CUX1-214ENST00000550008 KCNAB2Q13303 367 aa14.52□□□□□ -0.08
CUX1-214ENST00000550008 ARMCX4Q5H9R4 360 aa14.52□□□□□ -0.08
CUX1-214ENST00000550008 RSBN1Q5VWQ0 802 aaPredicted RBP14.52□□□□□ -0.08
CUX1-214ENST00000550008 RETREG3Q86VR2 466 aa14.52□□□□□ -0.08
CUX1-214ENST00000550008 FAM20CQ8IXL6 584 aa14.52□□□□□ -0.08
CUX1-214ENST00000550008 ZNF655Q8N720 491 aaPredicted RBP14.52□□□□□ -0.08
CUX1-214ENST00000550008 OR10G2Q8NGC3 310 aa14.52□□□□□ -0.08
CUX1-214ENST00000550008 TEX47Q8TBZ9 253 aa14.52□□□□□ -0.08
CUX1-214ENST00000550008 BCL7CQ8WUZ0 217 aaPredicted RBP14.52□□□□□ -0.08
CUX1-214ENST00000550008 RPF2Q9H7B2 306 aaKnown RBP14.52□□□□□ -0.08
CUX1-214ENST00000550008 IL23AQ9NPF7 189 aa14.52□□□□□ -0.08
CUX1-214ENST00000550008 DNAAF2Q9NVR5 837 aaKnown RBP14.52□□□□□ -0.08
CUX1-214ENST00000550008 BRWD3Q6RI45 1802 aa14.52□□□□□ -0.08
CUX1-214ENST00000550008 SHROOM3Q8TF72 1996 aa14.52□□□□□ -0.08
CUX1-214ENST00000550008 URADA6NGE7 173 aa14.52□□□□□ -0.08
CUX1-214ENST00000550008 MROH6A6NGR9 719 aa14.52□□□□□ -0.08
CUX1-214ENST00000550008 UBFD1O14562 309 aaKnown RBP14.52□□□□□ -0.08
CUX1-214ENST00000550008 GPX3P22352 226 aa14.52□□□□□ -0.08
CUX1-214ENST00000550008 ALAS2P22557 587 aa14.52□□□□□ -0.08
CUX1-214ENST00000550008 RPL4P36578 427 aaKnown RBP14.52□□□□□ -0.08
CUX1-214ENST00000550008 COPZ1P61923 177 aa14.52□□□□□ -0.08
CUX1-214ENST00000550008 CDK6Q00534 326 aa14.52□□□□□ -0.08
CUX1-214ENST00000550008 TEAD4Q15561 434 aa14.52□□□□□ -0.08
CUX1-214ENST00000550008 CTSL3PQ5NE16 218 aa14.52□□□□□ -0.08
CUX1-214ENST00000550008 ZFAND4Q86XD8 727 aa14.52□□□□□ -0.08
CUX1-214ENST00000550008 RNF130Q86XS8 419 aa14.52□□□□□ -0.08
CUX1-214ENST00000550008 SVOPLQ8N434 492 aa14.52□□□□□ -0.08
CUX1-214ENST00000550008 LKAAEAR1Q8TD35 194 aa14.52□□□□□ -0.08
CUX1-214ENST00000550008 RHBDF1Q96CC6 855 aa14.52□□□□□ -0.08
CUX1-214ENST00000550008 ZBED6CLQ96FA7 236 aaPredicted RBP14.52□□□□□ -0.08
CUX1-214ENST00000550008 COPS4Q9BT78 406 aa14.52□□□□□ -0.08
CUX1-214ENST00000550008 HERC2P3Q9BVR0 1158 aa14.52□□□□□ -0.08
CUX1-214ENST00000550008 TVP23BQ9NYZ1 205 aa14.52□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms