RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 FAM72AQ5TYM5 149 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 ACSM2BQ68CK6 577 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 FAM72DQ6L9T8 149 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 KIAA0408Q6ZU52 694 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 PTCHD4Q6ZW05 846 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 STRADAQ7RTN6 431 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 FAM72BQ86X60 149 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 PROSER1Q86XN7 944 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 ELMOD2Q8IZ81 293 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 OR8H3Q8N146 312 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 SCML4Q8N228 414 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 LEMD2Q8NC56 503 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 OR13C4Q8NGS5 318 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 OR4L1Q8NH43 312 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 FAM45AQ8TCE6 357 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 ATL1Q8WXF7 558 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 KAT2AQ92830 837 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 ROPN1LQ96C74 230 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 CEP295NLQ96MC4 621 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 KCNC2Q96PR1 638 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 TRMOQ9BU70 441 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 ASPNQ9BXN1 380 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 RBM38Q9H0Z9 239 aaKnown RBP5.33□□□□□ -1.56
LIMA1-203ENST00000547825 TP63Q9H3D4 680 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-203ENST00000547825 SERHL2Q9H4I8 314 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 AGO3Q9H9G7 860 aaKnown RBP5.33□□□□□ -1.56
LIMA1-203ENST00000547825 SERHLQ9NQF3 203 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 OLAHQ9NV23 265 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 MRPL39Q9NYK5 338 aaKnown RBP5.33□□□□□ -1.56
LIMA1-203ENST00000547825 ACTR3BQ9P1U1 418 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 BACE2Q9Y5Z0 518 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 U3KQE9 123 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 NINQ8N4C6 2090 aa5.33□□□□□ -1.56
LIMA1-203ENST00000547825 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-203ENST00000547825 GSAPA4D1B5 854 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 BBIP1A8MTZ0 92 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 CXCR6O00574 342 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 NME4O00746 187 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 TPST2O60704 377 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 NOS1APO75052 506 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-203ENST00000547825 OPN1SWP03999 348 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 EIF2S1P05198 315 aaKnown RBP5.32□□□□□ -1.56
LIMA1-203ENST00000547825 IL6P05231 212 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 OR4Q2P0C623 313 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 RAP2AP10114 183 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 PSKH1P11801 424 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 ZNF24P17028 368 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 TNNI3P19429 210 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 MATN1P21941 496 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 CYP2C18P33260 490 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 SLC15A1P46059 708 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 CLK3P49761 638 aaKnown RBP5.32□□□□□ -1.56
LIMA1-203ENST00000547825 PLA2G16P53816 162 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 OR4D2P58180 307 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 FAM189BP81408 668 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 LCP2Q13094 533 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 ZNF177Q13360 481 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-203ENST00000547825 MBTPS1Q14703 1052 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 STARD3Q14849 445 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 PDCD1Q15116 288 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 SF3B4Q15427 424 aaKnown RBP eCLIP5.32□□□□□ -1.56
LIMA1-203ENST00000547825 TIMM50Q3ZCQ8 353 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 SYTL3Q4VX76 610 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 C6orf141Q5SZD1 244 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 C11orf88Q6PI97 169 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 DSG4Q86SJ6 1040 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 KRT73Q86Y46 540 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 LRRC49Q8IUZ0 686 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 FAM217AQ8IXS0 508 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 TIGD4Q8IY51 512 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 LGI2Q8N0V4 545 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 SHISA5Q8N114 240 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 PDPRQ8NCN5 879 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 PHF10Q8WUB8 498 aaKnown RBP5.32□□□□□ -1.56
LIMA1-203ENST00000547825 MYDGFQ969H8 173 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 SLC2A13Q96QE2 648 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 ATP13A1Q9HD20 1204 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 CRNNQ9UBG3 495 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-203ENST00000547825 SIX4Q9UIU6 781 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 VPS28Q9UK41 221 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 GIT1Q9Y2X7 761 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 RP1L1Q8IWN7 2480 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-203ENST00000547825 COL4A3Q01955 1670 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 MYBPHLA2RUH7 354 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 F5H5T6 163 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 CDC7O00311 574 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 VPS4BO75351 444 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 MLYCDO95822 493 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 C9P02748 559 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 ASGR1P07306 291 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 PIM1P11309 404 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-203ENST00000547825 MYL12AP19105 171 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 KRT20P35900 424 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 AGTR2P50052 363 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 SCNN1GP51170 649 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 ACAP2Q15057 778 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 SNAPC1Q16533 368 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 TBRG1Q3YBR2 411 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 CYP27C1Q4G0S4 372 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 ATAD3BQ5T9A4 648 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms