RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, human

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-223	ENST00000543658	COL27A1	Q8IZC6	1860 aa	Predicted RBP	11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	TRBC2	A0A5B9	178 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	OR2A25	A4D2G3	310 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	SLCO1B7	G3V0H7	640 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	TMX2-CTNND1	H3BSU7	103 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	NTN3	O00634	580 aa	Predicted RBP	11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	PPP6C	O00743	305 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	FFAR3	O14843	346 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	SLC30A4	O14863	429 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	GPR42	O15529	346 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	OR1F1	O43749	312 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	KIF1C	O43896	1103 aa	Known RBP	11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	CAPN1	P07384	714 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	TROVE2	P10155	538 aa	Known RBP eCLIP	11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	THRA	P10827	490 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	CEACAM1	P13688	526 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	EPOR	P19235	508 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	GSTM2	P28161	218 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	SERPINB1	P30740	379 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	CSTF2	P33240	577 aa	Known RBP eCLIP	11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	CASP2	P42575	452 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	INHBC	P55103	352 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	ERVPABLB-1	P60509	514 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	YBX1	P67809	324 aa	Known RBP	11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	HSD11B2	P80365	405 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	OCRL	Q01968	901 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	PCDH1	Q08174	1060 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	CYP4F3	Q08477	520 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	DDX39B	Q13838	428 aa	Known RBP	11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	ZRSR2	Q15696	482 aa	Known RBP	11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	IMPG1	Q17R60	797 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	C10orf62	Q5T681	223 aa	Predicted RBP	11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	ZNF425	Q6IV72	752 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	TMIGD1	Q6UXZ0	262 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	PAQR7	Q86WK9	346 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	FAM129C	Q86XR2	697 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	DDIAS	Q8IXT1	998 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	CLYBL	Q8N0X4	340 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	LSMEM2	Q8N112	164 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	SELENOM	Q8WWX9	145 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	THAP11	Q96EK4	314 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	CHMP6	Q96FZ7	201 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	PPM1M	Q96MI6	270 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	SORT1	Q99523	831 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	ZFYVE21	Q9BQ24	234 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	NLN	Q9BYT8	704 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	STRADB	Q9C0K7	418 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	ZNF768	Q9H5H4	540 aa	Known RBP	11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	GEMIN8	Q9NWZ8	242 aa	Known RBP	11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	MARCO	Q9UEW3	520 aa	Predicted RBP	11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	ADGRE2	Q9UHX3	823 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	TRAF6	Q9Y4K3	522 aa		11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	EP300	Q09472	2414 aa	Predicted RBP	11.41	□□□□□ -0.58
DDB1-223	ENST00000543658	DNAH14	Q0VDD8	3507 aa		11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	IGHV5-51	A0A0C4DH38	117 aa		11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	IGKV1-8	A0A0C4DH67	115 aa		11.4	□□□□□ -0.58
DDB1-223	ENST00000543658		A0A0J9YVX5	310 aa		11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	IGHV5-10-1	A0A0J9YXX1	117 aa		11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	FEZF1	A0PJY2	475 aa		11.4	□□□□□ -0.58
DDB1-223	ENST00000543658		H0YIV9	168 aa		11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	UBFD1	O14562	309 aa	Known RBP	11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	ULK1	O75385	1050 aa		11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	SKAP2	O75563	359 aa	Predicted RBP	11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	WFS1	O76024	890 aa		11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	SERPIND1	P05546	499 aa		11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	ANKRD34C	P0C6C1	535 aa		11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	SLC35G6	P0C7Q6	338 aa		11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	FTH1P19	P0C7X4	201 aa		11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	HOXB3	P14651	431 aa	Predicted RBP	11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	LSS	P48449	732 aa		11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	CYP4F2	P78329	520 aa		11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	SIM1	P81133	766 aa	Predicted RBP	11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	CFHR1	Q03591	330 aa		11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	PDCD2	Q16342	344 aa	Predicted RBP	11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	FRG2	Q64ET8	278 aa		11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	FCRL6	Q6DN72	434 aa		11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	CLEC6A	Q6EIG7	209 aa		11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	RNF44	Q7L0R7	432 aa		11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	TRPV3	Q8NET8	790 aa		11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	OR4K1	Q8NGD4	311 aa		11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	PIWIL2	Q8TC59	973 aa	Known RBP	11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	TWIST2	Q8WVJ9	160 aa		11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	FAM122A	Q96E09	287 aa		11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	DEPDC7	Q96QD5	511 aa		11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	FRG2B	Q96QU4	278 aa		11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	KCNA7	Q96RP8	456 aa		11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	CENPK	Q9BS16	269 aa		11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	RTKN	Q9BST9	563 aa		11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	NT5DC2	Q9H857	520 aa		11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	SLCO1B3	Q9NPD5	702 aa		11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	VTI1B	Q9UEU0	232 aa		11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	ZDHHC2	Q9UIJ5	367 aa		11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	SSUH2	Q9Y2M2	353 aa		11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	TIMM22	Q9Y584	194 aa		11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	KLK4	Q9Y5K2	254 aa		11.4	□□□□□ -0.58
DDB1-223	ENST00000543658	SPAAR	A0A1B0GVQ0	90 aa		11.39	□□□□□ -0.59
DDB1-223	ENST00000543658	URAD	A6NGE7	173 aa		11.39	□□□□□ -0.59
DDB1-223	ENST00000543658	TRPC5OS	A6NMA1	111 aa		11.39	□□□□□ -0.59
DDB1-223	ENST00000543658	EDF1	O60869	148 aa	Known RBP	11.39	□□□□□ -0.59
DDB1-223	ENST00000543658	FGF4	P08620	206 aa		11.39	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms