RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 ONECUT2O95948 504 aa14.36□□□□□ -0.11
CPSF1-208ENST00000532560 EIF2S1P05198 315 aaKnown RBP14.36□□□□□ -0.11
CPSF1-208ENST00000532560 C2P06681 752 aa14.36□□□□□ -0.11
CPSF1-208ENST00000532560 MYBL2P10244 700 aa14.36□□□□□ -0.11
CPSF1-208ENST00000532560 PRKAR1AP10644 381 aa14.36□□□□□ -0.11
CPSF1-208ENST00000532560 ITGAXP20702 1163 aa14.36□□□□□ -0.11
CPSF1-208ENST00000532560 CNTFP26441 200 aa14.36□□□□□ -0.11
CPSF1-208ENST00000532560 GMPRP36959 345 aa14.36□□□□□ -0.11
CPSF1-208ENST00000532560 MSH2P43246 934 aa14.36□□□□□ -0.11
CPSF1-208ENST00000532560 MAGEA12P43365 314 aa14.36□□□□□ -0.11
CPSF1-208ENST00000532560 SLC6A12P48065 614 aa14.36□□□□□ -0.11
CPSF1-208ENST00000532560 CSNK1G2P78368 415 aa14.36□□□□□ -0.11
CPSF1-208ENST00000532560 DLG1Q12959 904 aa14.36□□□□□ -0.11
CPSF1-208ENST00000532560 MUM1Q2TAK8 710 aa14.36□□□□□ -0.11
CPSF1-208ENST00000532560 FAM214AQ32MH5 1076 aa14.36□□□□□ -0.11
CPSF1-208ENST00000532560 NKAIN1Q4KMZ8 207 aa14.36□□□□□ -0.11
CPSF1-208ENST00000532560 TTLL10Q6ZVT0 673 aa14.36□□□□□ -0.11
CPSF1-208ENST00000532560 GSPT2Q8IYD1 628 aaKnown RBP14.36□□□□□ -0.11
CPSF1-208ENST00000532560 CENPLQ8N0S6 344 aaPredicted RBP14.36□□□□□ -0.11
CPSF1-208ENST00000532560 CSNK1A1LQ8N752 337 aa14.36□□□□□ -0.11
CPSF1-208ENST00000532560 GOLGA6L1Q8N7Z2 621 aa14.36□□□□□ -0.11
CPSF1-208ENST00000532560 ENDOVQ8N8Q3 282 aaKnown RBP14.36□□□□□ -0.11
CPSF1-208ENST00000532560 PDPRQ8NCN5 879 aa14.36□□□□□ -0.11
CPSF1-208ENST00000532560 LSM14AQ8ND56 463 aaKnown RBP14.36□□□□□ -0.11
CPSF1-208ENST00000532560 DCAKDQ8WVC6 231 aa14.36□□□□□ -0.11
CPSF1-208ENST00000532560 RERGQ96A58 199 aaPredicted RBP14.36□□□□□ -0.11
CPSF1-208ENST00000532560 THAP11Q96EK4 314 aa14.36□□□□□ -0.11
CPSF1-208ENST00000532560 WBP1Q96G27 269 aa14.36□□□□□ -0.11
CPSF1-208ENST00000532560 C10orf90Q96M02 699 aa14.36□□□□□ -0.11
CPSF1-208ENST00000532560 SARGQ9BW04 601 aa14.36□□□□□ -0.11
CPSF1-208ENST00000532560 RALYQ9UKM9 306 aaKnown RBP14.36□□□□□ -0.11
CPSF1-208ENST00000532560 RNF112Q9ULX5 631 aa14.36□□□□□ -0.11
CPSF1-208ENST00000532560 FARSAQ9Y285 508 aaKnown RBP14.36□□□□□ -0.11
CPSF1-208ENST00000532560 MDC1Q14676 2089 aaKnown RBP14.36□□□□□ -0.11
CPSF1-208ENST00000532560 LOC400499M0QZD8 3231 aa14.36□□□□□ -0.11
CPSF1-208ENST00000532560 KCNE1BA0A087WTH5 132 aa14.35□□□□□ -0.11
CPSF1-208ENST00000532560 EXOC1LA0A1B0GW35 172 aa14.35□□□□□ -0.11
CPSF1-208ENST00000532560 TXNDC9O14530 226 aa14.35□□□□□ -0.11
CPSF1-208ENST00000532560 ATXN7O15265 892 aaPredicted RBP14.35□□□□□ -0.11
CPSF1-208ENST00000532560 KERAO60938 352 aa14.35□□□□□ -0.11
CPSF1-208ENST00000532560 KRT38O76015 456 aa14.35□□□□□ -0.11
CPSF1-208ENST00000532560 CD63P08962 238 aa14.35□□□□□ -0.11
CPSF1-208ENST00000532560 TFEBP19484 476 aa14.35□□□□□ -0.11
CPSF1-208ENST00000532560 TYK2P29597 1187 aa14.35□□□□□ -0.11
CPSF1-208ENST00000532560 CCR8P51685 355 aa14.35□□□□□ -0.11
CPSF1-208ENST00000532560 RPS18P62269 152 aaKnown RBP14.35□□□□□ -0.11
CPSF1-208ENST00000532560 IRF9Q00978 393 aa14.35□□□□□ -0.11
CPSF1-208ENST00000532560 FAM83EQ2M2I3 478 aa14.35□□□□□ -0.11
CPSF1-208ENST00000532560 GARNL3Q5VVW2 1013 aa14.35□□□□□ -0.11
CPSF1-208ENST00000532560 SULT1C3Q6IMI6 304 aa14.35□□□□□ -0.11
CPSF1-208ENST00000532560 C16orf46Q6P387 395 aa14.35□□□□□ -0.11
CPSF1-208ENST00000532560 PCSK4Q6UW60 755 aa14.35□□□□□ -0.11
CPSF1-208ENST00000532560 ISCA2Q86U28 154 aa14.35□□□□□ -0.11
CPSF1-208ENST00000532560 THOC6Q86W42 341 aaKnown RBP14.35□□□□□ -0.11
CPSF1-208ENST00000532560 PLD3Q8IV08 490 aa14.35□□□□□ -0.11
CPSF1-208ENST00000532560 ARHGEF39Q8N4T4 335 aa14.35□□□□□ -0.11
CPSF1-208ENST00000532560 OR4K1Q8NGD4 311 aa14.35□□□□□ -0.11
CPSF1-208ENST00000532560 UHMK1Q8TAS1 419 aaKnown RBP14.35□□□□□ -0.11
CPSF1-208ENST00000532560 STAG3L4Q8TBR4 150 aa14.35□□□□□ -0.11
CPSF1-208ENST00000532560 SLC5A11Q8WWX8 675 aa14.35□□□□□ -0.11
CPSF1-208ENST00000532560 NEIL2Q969S2 332 aa14.35□□□□□ -0.11
CPSF1-208ENST00000532560 FKBP10Q96AY3 582 aa14.35□□□□□ -0.11
CPSF1-208ENST00000532560 ATOH8Q96SQ7 321 aa14.35□□□□□ -0.11
CPSF1-208ENST00000532560 ALG9Q9H6U8 611 aa14.35□□□□□ -0.11
CPSF1-208ENST00000532560 NUDT4Q9NZJ9 180 aa14.35□□□□□ -0.11
CPSF1-208ENST00000532560 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.35□□□□□ -0.11
CPSF1-208ENST00000532560 NDOR1Q9UHB4 597 aa14.35□□□□□ -0.11
CPSF1-208ENST00000532560 TLK1Q9UKI8 766 aa14.35□□□□□ -0.11
CPSF1-208ENST00000532560 TCFL5Q9UL49 500 aa14.35□□□□□ -0.11
CPSF1-208ENST00000532560 RUVBL1Q9Y265 456 aaKnown RBP14.35□□□□□ -0.11
CPSF1-208ENST00000532560 PADI2Q9Y2J8 665 aa14.35□□□□□ -0.11
CPSF1-208ENST00000532560 DYRK1BQ9Y463 629 aa14.35□□□□□ -0.11
CPSF1-208ENST00000532560 A0A096LPK6 155 aa14.34□□□□□ -0.11
CPSF1-208ENST00000532560 NCF1BA6NI72 391 aaPredicted RBP14.34□□□□□ -0.11
CPSF1-208ENST00000532560 NCF1CA8MVU1 366 aaPredicted RBP14.34□□□□□ -0.11
CPSF1-208ENST00000532560 POC1B-GALNT4F8VUJ3 575 aa14.34□□□□□ -0.11
CPSF1-208ENST00000532560 P2RX6O15547 441 aa14.34□□□□□ -0.11
CPSF1-208ENST00000532560 WDR47O94967 919 aa14.34□□□□□ -0.11
CPSF1-208ENST00000532560 MED26O95402 600 aa14.34□□□□□ -0.11
CPSF1-208ENST00000532560 PIM1P11309 404 aaPredicted RBP14.34□□□□□ -0.11
CPSF1-208ENST00000532560 NCF1P14598 390 aaPredicted RBP14.34□□□□□ -0.11
CPSF1-208ENST00000532560 ALAS2P22557 587 aa14.34□□□□□ -0.11
CPSF1-208ENST00000532560 GRK3P35626 688 aa14.34□□□□□ -0.11
CPSF1-208ENST00000532560 GGT5P36269 586 aa14.34□□□□□ -0.11
CPSF1-208ENST00000532560 BCL6P41182 706 aa14.34□□□□□ -0.11
CPSF1-208ENST00000532560 NFKB2Q00653 900 aa14.34□□□□□ -0.11
CPSF1-208ENST00000532560 IL10RAQ13651 578 aa14.34□□□□□ -0.11
CPSF1-208ENST00000532560 ERV3-1Q14264 604 aa14.34□□□□□ -0.11
CPSF1-208ENST00000532560 TBR1Q16650 682 aa14.34□□□□□ -0.11
CPSF1-208ENST00000532560 UGT8Q16880 541 aa14.34□□□□□ -0.11
CPSF1-208ENST00000532560 HKDC1Q2TB90 917 aa14.34□□□□□ -0.11
CPSF1-208ENST00000532560 ATP1A1-AS1Q5TC04 95 aa14.34□□□□□ -0.11
CPSF1-208ENST00000532560 PRMT9Q6P2P2 845 aa14.34□□□□□ -0.11
CPSF1-208ENST00000532560 EMBQ6PCB8 327 aa14.34□□□□□ -0.11
CPSF1-208ENST00000532560 VN1R4Q7Z5H5 301 aa14.34□□□□□ -0.11
CPSF1-208ENST00000532560 RHEBL1Q8TAI7 183 aa14.34□□□□□ -0.11
CPSF1-208ENST00000532560 KCTD4Q8WVF5 259 aa14.34□□□□□ -0.11
CPSF1-208ENST00000532560 EXTL1Q92935 676 aa14.34□□□□□ -0.11
CPSF1-208ENST00000532560 NXNL1Q96CM4 212 aa14.34□□□□□ -0.11
CPSF1-208ENST00000532560 MVB12AQ96EY5 273 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms