RNA–Protein interactions for RNA: ENST00000532029.6

LRRK1-208, Transcript of leucine rich repeat kinase 1, human

TSL 1 (best) BASIC

Gene LRRK1, Length 1,241 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LRRK1-208	ENST00000532029	CNTNAP3	Q9BZ76	1288 aa		21.32	■■□□□ 1
LRRK1-208	ENST00000532029	C12orf65	Q9H3J6	166 aa	Known RBP	21.32	■■□□□ 1
LRRK1-208	ENST00000532029	EHD1	Q9H4M9	534 aa		21.32	■■□□□ 1
LRRK1-208	ENST00000532029	VIPAS39	Q9H9C1	493 aa		21.32	■■□□□ 1
LRRK1-208	ENST00000532029	ACTL7B	Q9Y614	415 aa		21.32	■■□□□ 1
LRRK1-208	ENST00000532029	AP1M2	Q9Y6Q5	423 aa		21.32	■■□□□ 1
LRRK1-208	ENST00000532029	LOC105369274	A0A096LPK9	316 aa		21.31	■■□□□ 1
LRRK1-208	ENST00000532029	LOC102723532	A0A0G2JNH3	316 aa		21.31	■■□□□ 1
LRRK1-208	ENST00000532029	TRBC2	A0A5B9	178 aa		21.31	■■□□□ 1
LRRK1-208	ENST00000532029	FEZF1	A0PJY2	475 aa		21.31	■■□□□ 1
LRRK1-208	ENST00000532029	STMND1	H3BQB6	276 aa		21.31	■■□□□ 1
LRRK1-208	ENST00000532029	ZSCAN9	O15535	394 aa	Predicted RBP	21.31	■■□□□ 1
LRRK1-208	ENST00000532029	OR1F1	O43749	312 aa		21.31	■■□□□ 1
LRRK1-208	ENST00000532029	CPA3	P15088	417 aa		21.31	■■□□□ 1
LRRK1-208	ENST00000532029	CREB1	P16220	341 aa		21.31	■■□□□ 1
LRRK1-208	ENST00000532029	VARS	P26640	1264 aa	Known RBP	21.31	■■□□□ 1
LRRK1-208	ENST00000532029	PCBP4	P57723	403 aa	Known RBP	21.31	■■□□□ 1
LRRK1-208	ENST00000532029	CHIT1	Q13231	466 aa		21.31	■■□□□ 1
LRRK1-208	ENST00000532029	GRM7	Q14831	915 aa		21.31	■■□□□ 1
LRRK1-208	ENST00000532029	TNFAIP8L3	Q5GJ75	292 aa		21.31	■■□□□ 1
LRRK1-208	ENST00000532029	GOLGA7	Q7Z5G4	137 aa		21.31	■■□□□ 1
LRRK1-208	ENST00000532029	ZFAND4	Q86XD8	727 aa		21.31	■■□□□ 1
LRRK1-208	ENST00000532029	OR4N4	Q8N0Y3	316 aa		21.31	■■□□□ 1
LRRK1-208	ENST00000532029	KRT78	Q8N1N4	520 aa		21.31	■■□□□ 1
LRRK1-208	ENST00000532029	ZNF655	Q8N720	491 aa	Predicted RBP	21.31	■■□□□ 1
LRRK1-208	ENST00000532029	ARMC2	Q8NEN0	867 aa		21.31	■■□□□ 1
LRRK1-208	ENST00000532029	PPP4R1	Q8TF05	950 aa		21.31	■■□□□ 1
LRRK1-208	ENST00000532029	RNF31	Q96EP0	1072 aa		21.31	■■□□□ 1
LRRK1-208	ENST00000532029	PTCD3	Q96EY7	689 aa	Known RBP	21.31	■■□□□ 1
LRRK1-208	ENST00000532029	ZNF285	Q96NJ3	590 aa		21.31	■■□□□ 1
LRRK1-208	ENST00000532029	EFCAB11	Q9BUY7	163 aa		21.31	■■□□□ 1
LRRK1-208	ENST00000532029	NLN	Q9BYT8	704 aa		21.31	■■□□□ 1
LRRK1-208	ENST00000532029	ACTR5	Q9H9F9	607 aa	Predicted RBP	21.31	■■□□□ 1
LRRK1-208	ENST00000532029	TMBIM4	Q9HC24	238 aa		21.31	■■□□□ 1
LRRK1-208	ENST00000532029	ACSL6	Q9UKU0	697 aa		21.31	■■□□□ 1
LRRK1-208	ENST00000532029	PCDHB3	Q9Y5E6	796 aa		21.31	■■□□□ 1
LRRK1-208	ENST00000532029	KCNE1B	A0A087WTH5	132 aa		21.3	■■□□□ 1
LRRK1-208	ENST00000532029	E2F3	O00716	465 aa		21.3	■■□□□ 1
LRRK1-208	ENST00000532029	TXNDC9	O14530	226 aa		21.3	■■□□□ 1
LRRK1-208	ENST00000532029	ZNF749	O43361	778 aa		21.3	■■□□□ 1
LRRK1-208	ENST00000532029	CPNE3	O75131	537 aa	Known RBP	21.3	■■□□□ 1
LRRK1-208	ENST00000532029	NTRK1	P04629	796 aa		21.3	■■□□□ 1
LRRK1-208	ENST00000532029	CTSB	P07858	339 aa		21.3	■■□□□ 1
LRRK1-208	ENST00000532029	RPS17	P08708	135 aa	Known RBP	21.3	■■□□□ 1
LRRK1-208	ENST00000532029	HBQ1	P09105	142 aa		21.3	■■□□□ 1
LRRK1-208	ENST00000532029	ZNF28	P17035	718 aa		21.3	■■□□□ 1
LRRK1-208	ENST00000532029	EPOR	P19235	508 aa		21.3	■■□□□ 1
LRRK1-208	ENST00000532029	BCL6	P41182	706 aa		21.3	■■□□□ 1
LRRK1-208	ENST00000532029	PRKAA2	P54646	552 aa		21.3	■■□□□ 1
LRRK1-208	ENST00000532029	HERVK_113	P63132	956 aa		21.3	■■□□□ 1
LRRK1-208	ENST00000532029	LAPTM5	Q13571	262 aa		21.3	■■□□□ 1
LRRK1-208	ENST00000532029	DOC2A	Q14183	400 aa		21.3	■■□□□ 1
LRRK1-208	ENST00000532029	SLBP	Q14493	270 aa	Known RBP eCLIP	21.3	■■□□□ 1
LRRK1-208	ENST00000532029	RBBP5	Q15291	538 aa	Known RBP	21.3	■■□□□ 1
LRRK1-208	ENST00000532029	PAGE2B	Q5JRK9	111 aa		21.3	■■□□□ 1
LRRK1-208	ENST00000532029	PRAMEF17	Q5VTA0	474 aa		21.3	■■□□□ 1
LRRK1-208	ENST00000532029	CSNK1A1L	Q8N752	337 aa		21.3	■■□□□ 1
LRRK1-208	ENST00000532029	MFSD9	Q8NBP5	474 aa		21.3	■■□□□ 1
LRRK1-208	ENST00000532029	TCP10L	Q8TDR4	215 aa		21.3	■■□□□ 1
LRRK1-208	ENST00000532029	ATP6V1E2	Q96A05	226 aa		21.3	■■□□□ 1
LRRK1-208	ENST00000532029	CLIP3	Q96DZ5	547 aa		21.3	■■□□□ 1
LRRK1-208	ENST00000532029	FAM111A	Q96PZ2	611 aa		21.3	■■□□□ 1
LRRK1-208	ENST00000532029	NDC1	Q9BTX1	674 aa		21.3	■■□□□ 1
LRRK1-208	ENST00000532029	SARG	Q9BW04	601 aa		21.3	■■□□□ 1
LRRK1-208	ENST00000532029	ERVK-6	Q9BXR3	956 aa		21.3	■■□□□ 1
LRRK1-208	ENST00000532029	SPNS1	Q9H2V7	528 aa		21.3	■■□□□ 1
LRRK1-208	ENST00000532029	IPPK	Q9H8X2	491 aa		21.3	■■□□□ 1
LRRK1-208	ENST00000532029	SSU72	Q9NP77	194 aa	Known RBP	21.3	■■□□□ 1
LRRK1-208	ENST00000532029	STARD5	Q9NSY2	213 aa		21.3	■■□□□ 1
LRRK1-208	ENST00000532029	GEMIN8	Q9NWZ8	242 aa	Known RBP	21.3	■■□□□ 1
LRRK1-208	ENST00000532029	PCTP	Q9UKL6	214 aa		21.3	■■□□□ 1
LRRK1-208	ENST00000532029	SRPK3	Q9UPE1	567 aa		21.3	■■□□□ 1
LRRK1-208	ENST00000532029	TMEM184B	Q9Y519	407 aa	Predicted RBP	21.3	■■□□□ 1
LRRK1-208	ENST00000532029	PCDHGA4	Q9Y5G9	962 aa		21.3	■■□□□ 1
LRRK1-208	ENST00000532029	TMEM8B	A6NDV4	472 aa		21.29	■■□□□ 1
LRRK1-208	ENST00000532029		G3V2L1	256 aa		21.29	■■□□□ 1
LRRK1-208	ENST00000532029		H3BMH7	237 aa		21.29	■■□□□ 1
LRRK1-208	ENST00000532029	LCMT2	O60294	686 aa	Known RBP	21.29	■■□□□ 1
LRRK1-208	ENST00000532029	IMPDH1	P20839	514 aa		21.29	■■□□□ 1
LRRK1-208	ENST00000532029	ARL1	P40616	181 aa	Predicted RBP	21.29	■■□□□ 1
LRRK1-208	ENST00000532029	ARSF	P54793	590 aa		21.29	■■□□□ 1
LRRK1-208	ENST00000532029	TBCC	Q15814	346 aa		21.29	■■□□□ 1
LRRK1-208	ENST00000532029	HIST2H2AC	Q16777	129 aa	Predicted RBP	21.29	■■□□□ 1
LRRK1-208	ENST00000532029	ZNF678	Q5SXM1	525 aa		21.29	■■□□□ 1
LRRK1-208	ENST00000532029	HIST2H2AA3	Q6FI13	130 aa		21.29	■■□□□ 1
LRRK1-208	ENST00000532029	ZNF740	Q8NDX6	193 aa		21.29	■■□□□ 1
LRRK1-208	ENST00000532029	WDR34	Q96EX3	536 aa		21.29	■■□□□ 1
LRRK1-208	ENST00000532029	TMEM237	Q96Q45	408 aa		21.29	■■□□□ 1
LRRK1-208	ENST00000532029	C1QTNF3	Q9BXJ4	246 aa		21.29	■■□□□ 1
LRRK1-208	ENST00000532029	PITHD1	Q9GZP4	211 aa	Predicted RBP	21.29	■■□□□ 1
LRRK1-208	ENST00000532029	ACTR8	Q9H981	624 aa		21.29	■■□□□ 1
LRRK1-208	ENST00000532029	SLC17A7	Q9P2U7	560 aa		21.29	■■□□□ 1
LRRK1-208	ENST00000532029	COPG2	Q9UBF2	871 aa		21.29	■■□□□ 1
LRRK1-208	ENST00000532029	IQCJ-SCHIP1	C9J366	451 aa	Predicted RBP	21.28	■■□□□ 1
LRRK1-208	ENST00000532029	TYROBP	O43914	113 aa		21.28	■■□□□ 1
LRRK1-208	ENST00000532029	SUPT7L	O94864	414 aa		21.28	■■□□□ 1
LRRK1-208	ENST00000532029	LIPC	P11150	499 aa		21.28	■■□□□ 1
LRRK1-208	ENST00000532029	CASP2	P42575	452 aa		21.28	■■□□□ 1
LRRK1-208	ENST00000532029	SCTR	P47872	440 aa		21.28	■■□□□ 1
LRRK1-208	ENST00000532029	FAM214A	Q32MH5	1076 aa		21.28	■■□□□ 1

Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms