RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 PROCP04070 461 aa13.84□□□□□ -0.19
CPSF1-206ENST00000531480 CTSBP07858 339 aa13.84□□□□□ -0.19
CPSF1-206ENST00000531480 GFAPP14136 432 aa13.84□□□□□ -0.19
CPSF1-206ENST00000531480 ZNF28P17035 718 aa13.84□□□□□ -0.19
CPSF1-206ENST00000531480 RORAP35398 523 aa13.84□□□□□ -0.19
CPSF1-206ENST00000531480 CCR8P51685 355 aa13.84□□□□□ -0.19
CPSF1-206ENST00000531480 PCBP4P57723 403 aaKnown RBP13.84□□□□□ -0.19
CPSF1-206ENST00000531480 RPS15AP62244 130 aaKnown RBP13.84□□□□□ -0.19
CPSF1-206ENST00000531480 REEP5Q00765 189 aa13.84□□□□□ -0.19
CPSF1-206ENST00000531480 TBCCQ15814 346 aa13.84□□□□□ -0.19
CPSF1-206ENST00000531480 PDK4Q16654 411 aa13.84□□□□□ -0.19
CPSF1-206ENST00000531480 PRTGQ2VWP7 1150 aa13.84□□□□□ -0.19
CPSF1-206ENST00000531480 CCDC153Q494R4 210 aa13.84□□□□□ -0.19
CPSF1-206ENST00000531480 FBXO48Q5FWF7 155 aa13.84□□□□□ -0.19
CPSF1-206ENST00000531480 CATSPEREQ5SY80 951 aa13.84□□□□□ -0.19
CPSF1-206ENST00000531480 YOD1Q5VVQ6 348 aaPredicted RBP13.84□□□□□ -0.19
CPSF1-206ENST00000531480 ATG9BQ674R7 924 aa13.84□□□□□ -0.19
CPSF1-206ENST00000531480 EXT2Q93063 718 aa13.84□□□□□ -0.19
CPSF1-206ENST00000531480 TM4SF19Q96DZ7 209 aa13.84□□□□□ -0.19
CPSF1-206ENST00000531480 APOPT1Q96IL0 206 aa13.84□□□□□ -0.19
CPSF1-206ENST00000531480 SELENOSQ9BQE4 189 aa13.84□□□□□ -0.19
CPSF1-206ENST00000531480 PITHD1Q9GZP4 211 aaPredicted RBP13.84□□□□□ -0.19
CPSF1-206ENST00000531480 ZNF446Q9NWS9 450 aa13.84□□□□□ -0.19
CPSF1-206ENST00000531480 CPSF2Q9P2I0 782 aaKnown RBP13.84□□□□□ -0.19
CPSF1-206ENST00000531480 GRID1Q9ULK0 1009 aa13.84□□□□□ -0.19
CPSF1-206ENST00000531480 DYRK1BQ9Y463 629 aa13.84□□□□□ -0.19
CPSF1-206ENST00000531480 AP1M2Q9Y6Q5 423 aa13.84□□□□□ -0.19
CPSF1-206ENST00000531480 CFAP47Q6ZTR5 3102 aa13.84□□□□□ -0.19
CPSF1-206ENST00000531480 LAMA5O15230 3695 aa13.83□□□□□ -0.2
CPSF1-206ENST00000531480 LOC105369274A0A096LPK9 316 aa13.83□□□□□ -0.2
CPSF1-206ENST00000531480 LOC102723532A0A0G2JNH3 316 aa13.83□□□□□ -0.2
CPSF1-206ENST00000531480 A0A0J9YVX5 310 aa13.83□□□□□ -0.2
CPSF1-206ENST00000531480 TRBC2A0A5B9 178 aa13.83□□□□□ -0.2
CPSF1-206ENST00000531480 A8MT66 165 aa13.83□□□□□ -0.2
CPSF1-206ENST00000531480 E7EQ34 232 aa13.83□□□□□ -0.2
CPSF1-206ENST00000531480 G3V2L1 256 aa13.83□□□□□ -0.2
CPSF1-206ENST00000531480 H0YGG7 62 aa13.83□□□□□ -0.2
CPSF1-206ENST00000531480 ZSCAN9O15535 394 aaPredicted RBP13.83□□□□□ -0.2
CPSF1-206ENST00000531480 DLX3O60479 287 aa13.83□□□□□ -0.2
CPSF1-206ENST00000531480 PLIN3O60664 434 aa13.83□□□□□ -0.2
CPSF1-206ENST00000531480 SCRG1O75711 98 aa13.83□□□□□ -0.2
CPSF1-206ENST00000531480 OR2B3O76000 313 aa13.83□□□□□ -0.2
CPSF1-206ENST00000531480 WFS1O76024 890 aa13.83□□□□□ -0.2
CPSF1-206ENST00000531480 RPS17P08708 135 aaKnown RBP13.83□□□□□ -0.2
CPSF1-206ENST00000531480 C1GALT1C1LP0DN25 315 aa13.83□□□□□ -0.2
CPSF1-206ENST00000531480 LIPCP11150 499 aa13.83□□□□□ -0.2
CPSF1-206ENST00000531480 EIF2S3P41091 472 aaKnown RBP13.83□□□□□ -0.2
CPSF1-206ENST00000531480 ARF3P61204 181 aaPredicted RBP13.83□□□□□ -0.2
CPSF1-206ENST00000531480 AGBL2Q5U5Z8 902 aa13.83□□□□□ -0.2
CPSF1-206ENST00000531480 ZNF385CQ66K41 422 aaPredicted RBP13.83□□□□□ -0.2
CPSF1-206ENST00000531480 RHBDD2Q6NTF9 364 aa13.83□□□□□ -0.2
CPSF1-206ENST00000531480 C16orf46Q6P387 395 aa13.83□□□□□ -0.2
CPSF1-206ENST00000531480 TIPARPQ7Z3E1 657 aaKnown RBP13.83□□□□□ -0.2
CPSF1-206ENST00000531480 VN1R4Q7Z5H5 301 aa13.83□□□□□ -0.2
CPSF1-206ENST00000531480 GPR135Q8IZ08 494 aa13.83□□□□□ -0.2
CPSF1-206ENST00000531480 OR4N4Q8N0Y3 316 aa13.83□□□□□ -0.2
CPSF1-206ENST00000531480 C4orf33Q8N1A6 199 aa13.83□□□□□ -0.2
CPSF1-206ENST00000531480 PTGR2Q8N8N7 351 aaPredicted RBP13.83□□□□□ -0.2
CPSF1-206ENST00000531480 SLC38A9Q8NBW4 561 aa13.83□□□□□ -0.2
CPSF1-206ENST00000531480 ZNF248Q8NDW4 579 aa13.83□□□□□ -0.2
CPSF1-206ENST00000531480 ALKBH8Q96BT7 664 aaKnown RBP13.83□□□□□ -0.2
CPSF1-206ENST00000531480 SCYL1Q96KG9 808 aa13.83□□□□□ -0.2
CPSF1-206ENST00000531480 ULBP3Q9BZM4 244 aa13.83□□□□□ -0.2
CPSF1-206ENST00000531480 SPRTNQ9H040 489 aaPredicted RBP13.83□□□□□ -0.2
CPSF1-206ENST00000531480 SPNS1Q9H2V7 528 aa13.83□□□□□ -0.2
CPSF1-206ENST00000531480 CENPHQ9H3R5 247 aa13.83□□□□□ -0.2
CPSF1-206ENST00000531480 NT5DC2Q9H857 520 aa13.83□□□□□ -0.2
CPSF1-206ENST00000531480 SSU72Q9NP77 194 aaKnown RBP13.83□□□□□ -0.2
CPSF1-206ENST00000531480 ABCF3Q9NUQ8 709 aa13.83□□□□□ -0.2
CPSF1-206ENST00000531480 OPTCQ9UBM4 332 aa13.83□□□□□ -0.2
CPSF1-206ENST00000531480 PLLPQ9Y342 182 aa13.83□□□□□ -0.2
CPSF1-206ENST00000531480 PCDHGA4Q9Y5G9 962 aa13.83□□□□□ -0.2
CPSF1-206ENST00000531480 ACTL7BQ9Y614 415 aa13.83□□□□□ -0.2
CPSF1-206ENST00000531480 URB1O60287 2271 aaKnown RBP13.83□□□□□ -0.2
CPSF1-206ENST00000531480 COPEO14579 308 aa13.82□□□□□ -0.2
CPSF1-206ENST00000531480 TYROBPO43914 113 aa13.82□□□□□ -0.2
CPSF1-206ENST00000531480 LCMT2O60294 686 aaKnown RBP13.82□□□□□ -0.2
CPSF1-206ENST00000531480 CCNT2O60583 730 aaKnown RBP13.82□□□□□ -0.2
CPSF1-206ENST00000531480 CPNE3O75131 537 aaKnown RBP13.82□□□□□ -0.2
CPSF1-206ENST00000531480 SMIM24O75264 130 aa13.82□□□□□ -0.2
CPSF1-206ENST00000531480 KIAA0754O94854 1291 aa13.82□□□□□ -0.2
CPSF1-206ENST00000531480 SIX3O95343 332 aaPredicted RBP13.82□□□□□ -0.2
CPSF1-206ENST00000531480 ONECUT2O95948 504 aa13.82□□□□□ -0.2
CPSF1-206ENST00000531480 HBQ1P09105 142 aa13.82□□□□□ -0.2
CPSF1-206ENST00000531480 ATP5F1P24539 256 aaPredicted RBP13.82□□□□□ -0.2
CPSF1-206ENST00000531480 AHRP35869 848 aa13.82□□□□□ -0.2
CPSF1-206ENST00000531480 BCL6P41182 706 aa13.82□□□□□ -0.2
CPSF1-206ENST00000531480 SCTRP47872 440 aa13.82□□□□□ -0.2
CPSF1-206ENST00000531480 PIK3CGP48736 1102 aa13.82□□□□□ -0.2
CPSF1-206ENST00000531480 MANEAQ5SRI9 462 aa13.82□□□□□ -0.2
CPSF1-206ENST00000531480 PRAMEF17Q5VTA0 474 aa13.82□□□□□ -0.2
CPSF1-206ENST00000531480 ZFAND4Q86XD8 727 aa13.82□□□□□ -0.2
CPSF1-206ENST00000531480 TMEM126BQ8IUX1 230 aa13.82□□□□□ -0.2
CPSF1-206ENST00000531480 SRRM1Q8IYB3 904 aaKnown RBP13.82□□□□□ -0.2
CPSF1-206ENST00000531480 MFSD9Q8NBP5 474 aa13.82□□□□□ -0.2
CPSF1-206ENST00000531480 ZNF740Q8NDX6 193 aa13.82□□□□□ -0.2
CPSF1-206ENST00000531480 RDH11Q8TC12 318 aa13.82□□□□□ -0.2
CPSF1-206ENST00000531480 NKD1Q969G9 470 aa13.82□□□□□ -0.2
CPSF1-206ENST00000531480 PTCD3Q96EY7 689 aaKnown RBP13.82□□□□□ -0.2
CPSF1-206ENST00000531480 SEC16BQ96JE7 1060 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms