RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 ZNF480Q8WV37 535 aa22.32■■□□□ 1.16
CPSF1-202ENST00000527827 TCF12Q99081 682 aa22.32■■□□□ 1.16
CPSF1-202ENST00000527827 FAM114A2Q9NRY5 505 aa22.32■■□□□ 1.16
CPSF1-202ENST00000527827 STMN3Q9NZ72 180 aa22.32■■□□□ 1.16
CPSF1-202ENST00000527827 SH3BGRL2Q9UJC5 107 aa22.32■■□□□ 1.16
CPSF1-202ENST00000527827 DCHS2Q6V1P9 2916 aa22.31■■□□□ 1.16
CPSF1-202ENST00000527827 E7ENX8 843 aa22.31■■□□□ 1.16
CPSF1-202ENST00000527827 TXNDC9O14530 226 aa22.31■■□□□ 1.16
CPSF1-202ENST00000527827 HAT1O14929 419 aa22.31■■□□□ 1.16
CPSF1-202ENST00000527827 CCNDBP1O95273 360 aa22.31■■□□□ 1.16
CPSF1-202ENST00000527827 SLC16A8O95907 504 aa22.31■■□□□ 1.16
CPSF1-202ENST00000527827 CATP04040 527 aaKnown RBP22.31■■□□□ 1.16
CPSF1-202ENST00000527827 C8orf89P0DMQ9 161 aa22.31■■□□□ 1.16
CPSF1-202ENST00000527827 PTGER4P35408 488 aa22.31■■□□□ 1.16
CPSF1-202ENST00000527827 HSD17B2P37059 387 aa22.31■■□□□ 1.16
CPSF1-202ENST00000527827 TAP2Q03519 686 aa22.31■■□□□ 1.16
CPSF1-202ENST00000527827 ZNF33BQ06732 778 aa22.31■■□□□ 1.16
CPSF1-202ENST00000527827 ZNF800Q2TB10 664 aaPredicted RBP eCLIP22.31■■□□□ 1.16
CPSF1-202ENST00000527827 RPTNQ6XPR3 784 aa22.31■■□□□ 1.16
CPSF1-202ENST00000527827 PLD3Q8IV08 490 aa22.31■■□□□ 1.16
CPSF1-202ENST00000527827 SPNS2Q8IVW8 549 aa22.31■■□□□ 1.16
CPSF1-202ENST00000527827 VN1R1Q9GZP7 353 aa22.31■■□□□ 1.16
CPSF1-202ENST00000527827 UTP6Q9NYH9 597 aaKnown RBP22.31■■□□□ 1.16
CPSF1-202ENST00000527827 SOX13Q9UN79 622 aa22.31■■□□□ 1.16
CPSF1-202ENST00000527827 DRG1Q9Y295 367 aaKnown RBP22.31■■□□□ 1.16
CPSF1-202ENST00000527827 IGHV3-20A0A0C4DH32 117 aa22.3■■□□□ 1.16
CPSF1-202ENST00000527827 AP3B1O00203 1094 aa22.3■■□□□ 1.16
CPSF1-202ENST00000527827 CCNG2Q16589 344 aa22.3■■□□□ 1.16
CPSF1-202ENST00000527827 MTFR2Q6P444 385 aa22.3■■□□□ 1.16
CPSF1-202ENST00000527827 LANCL3Q6ZV70 420 aa22.3■■□□□ 1.16
CPSF1-202ENST00000527827 CENPUQ71F23 418 aa22.3■■□□□ 1.16
CPSF1-202ENST00000527827 REXO1L1PQ8IX06 675 aa22.3■■□□□ 1.16
CPSF1-202ENST00000527827 LRRC56Q8IYG6 542 aaPredicted RBP22.3■■□□□ 1.16
CPSF1-202ENST00000527827 RNF10Q8N5U6 811 aaKnown RBP22.3■■□□□ 1.16
CPSF1-202ENST00000527827 SLC30A3Q99726 388 aa22.3■■□□□ 1.16
CPSF1-202ENST00000527827 CHST11Q9NPF2 352 aa22.3■■□□□ 1.16
CPSF1-202ENST00000527827 SCN3AQ9NY46 2000 aa22.3■■□□□ 1.16
CPSF1-202ENST00000527827 SMAPO00193 183 aa22.29■■□□□ 1.16
CPSF1-202ENST00000527827 SEC24DO94855 1032 aaPredicted RBP22.29■■□□□ 1.16
CPSF1-202ENST00000527827 STATHP02808 62 aa22.29■■□□□ 1.16
CPSF1-202ENST00000527827 SNRPB2P08579 225 aaKnown RBP22.29■■□□□ 1.16
CPSF1-202ENST00000527827 MYBL2P10244 700 aa22.29■■□□□ 1.16
CPSF1-202ENST00000527827 OGNP20774 298 aaKnown RBP22.29■■□□□ 1.16
CPSF1-202ENST00000527827 CLCN7P51798 805 aa22.29■■□□□ 1.16
CPSF1-202ENST00000527827 ABATP80404 500 aa22.29■■□□□ 1.16
CPSF1-202ENST00000527827 RBPJQ06330 500 aa22.29■■□□□ 1.16
CPSF1-202ENST00000527827 ZXDCQ2QGD7 858 aaPredicted RBP22.29■■□□□ 1.16
CPSF1-202ENST00000527827 DRICH1Q6PGQ1 229 aaPredicted RBP22.29■■□□□ 1.16
CPSF1-202ENST00000527827 C4orf22Q6V702 233 aa22.29■■□□□ 1.16
CPSF1-202ENST00000527827 GDF7Q7Z4P5 450 aa22.29■■□□□ 1.16
CPSF1-202ENST00000527827 OR9A4Q8NGU2 314 aa22.29■■□□□ 1.16
CPSF1-202ENST00000527827 LURAP1Q96LR2 239 aa22.29■■□□□ 1.16
CPSF1-202ENST00000527827 CYTH2Q99418 400 aa22.29■■□□□ 1.16
CPSF1-202ENST00000527827 ABCF3Q9NUQ8 709 aa22.29■■□□□ 1.16
CPSF1-202ENST00000527827 TEKT2Q9UIF3 430 aa22.29■■□□□ 1.16
CPSF1-202ENST00000527827 TCRBV7S3A2A0A539 114 aa22.28■■□□□ 1.16
CPSF1-202ENST00000527827 ZNF839A8K0R7 811 aa22.28■■□□□ 1.16
CPSF1-202ENST00000527827 A8MUI8 341 aa22.28■■□□□ 1.16
CPSF1-202ENST00000527827 PFDN6O15212 129 aa22.28■■□□□ 1.16
CPSF1-202ENST00000527827 AVPR1BP47901 424 aa22.28■■□□□ 1.16
CPSF1-202ENST00000527827 ADORA2A-AS1P86434 159 aa22.28■■□□□ 1.16
CPSF1-202ENST00000527827 NDUFA9Q16795 377 aa22.28■■□□□ 1.16
CPSF1-202ENST00000527827 LONRF1Q17RB8 773 aa22.28■■□□□ 1.16
CPSF1-202ENST00000527827 KCTD19Q17RG1 926 aaPredicted RBP22.28■■□□□ 1.16
CPSF1-202ENST00000527827 ZNF766Q5HY98 468 aa22.28■■□□□ 1.16
CPSF1-202ENST00000527827 KIAA0930Q6ICG6 404 aaPredicted RBP22.28■■□□□ 1.16
CPSF1-202ENST00000527827 H3F3CQ6NXT2 135 aa22.28■■□□□ 1.16
CPSF1-202ENST00000527827 PRSS41Q7RTY9 318 aa22.28■■□□□ 1.16
CPSF1-202ENST00000527827 CPEB2Q7Z5Q1 589 aaKnown RBP22.28■■□□□ 1.16
CPSF1-202ENST00000527827 ADCK2Q7Z695 626 aa22.28■■□□□ 1.16
CPSF1-202ENST00000527827 FBXO15Q8NCQ5 510 aaPredicted RBP22.28■■□□□ 1.16
CPSF1-202ENST00000527827 GIMAP7Q8NHV1 300 aa22.28■■□□□ 1.16
CPSF1-202ENST00000527827 METTL21AQ8WXB1 218 aa22.28■■□□□ 1.16
CPSF1-202ENST00000527827 ADGRG4Q8IZF6 3080 aa22.27■■□□□ 1.16
CPSF1-202ENST00000527827 CACNA1CQ13936 2221 aa22.27■■□□□ 1.16
CPSF1-202ENST00000527827 E5RI56 91 aa22.27■■□□□ 1.16
CPSF1-202ENST00000527827 H0YIG0 161 aa22.27■■□□□ 1.16
CPSF1-202ENST00000527827 H7BY64 318 aa22.27■■□□□ 1.16
CPSF1-202ENST00000527827 SLC19A2O60779 497 aa22.27■■□□□ 1.16
CPSF1-202ENST00000527827 TACC2O95359 2948 aa22.27■■□□□ 1.16
CPSF1-202ENST00000527827 C3AR1Q16581 482 aa22.27■■□□□ 1.16
CPSF1-202ENST00000527827 BTBD16Q32M84 506 aa22.27■■□□□ 1.16
CPSF1-202ENST00000527827 ACER2Q5QJU3 275 aa22.27■■□□□ 1.16
CPSF1-202ENST00000527827 FCRLBQ6BAA4 426 aa22.27■■□□□ 1.16
CPSF1-202ENST00000527827 PLAG1Q6DJT9 500 aa22.27■■□□□ 1.16
CPSF1-202ENST00000527827 VN1R4Q7Z5H5 301 aa22.27■■□□□ 1.16
CPSF1-202ENST00000527827 CILP2Q8IUL8 1156 aa22.27■■□□□ 1.16
CPSF1-202ENST00000527827 BEST3Q8N1M1 668 aa22.27■■□□□ 1.16
CPSF1-202ENST00000527827 PRAP1Q96NZ9 151 aa22.27■■□□□ 1.16
CPSF1-202ENST00000527827 MED16Q9Y2X0 877 aa22.27■■□□□ 1.16
CPSF1-202ENST00000527827 PCDHGB6Q9Y5F9 930 aa22.27■■□□□ 1.16
CPSF1-202ENST00000527827 OR2W5A6NFC9 320 aa22.26■■□□□ 1.15
CPSF1-202ENST00000527827 NSA2O95478 260 aaKnown RBP22.26■■□□□ 1.15
CPSF1-202ENST00000527827 CYC1P08574 325 aa22.26■■□□□ 1.15
CPSF1-202ENST00000527827 F7P08709 466 aaPredicted RBP22.26■■□□□ 1.15
CPSF1-202ENST00000527827 COX6B1P14854 86 aa22.26■■□□□ 1.15
CPSF1-202ENST00000527827 TPSB2P20231 275 aa22.26■■□□□ 1.15
CPSF1-202ENST00000527827 CDK16Q00536 496 aa22.26■■□□□ 1.15
CPSF1-202ENST00000527827 TPSAB1Q15661 275 aa22.26■■□□□ 1.15
CPSF1-202ENST00000527827 NEPROQ6NW34 567 aa22.26■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms