RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 GNA13Q14344 377 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 TIGD6Q17RP2 521 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 OGFRL1Q5TC84 451 aaPredicted RBP11.36□□□□□ -0.59
SYNPO-204ENST00000519664 NOXRED1Q6NXP6 359 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 C17orf99Q6UX52 265 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 CENPSQ8N2Z9 138 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 AHCYL2Q96HN2 611 aaKnown RBP11.36□□□□□ -0.59
SYNPO-204ENST00000519664 FCRL4Q96PJ5 515 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 POLR2J2Q9GZM3 115 aaKnown RBP11.36□□□□□ -0.59
SYNPO-204ENST00000519664 DPEP2Q9H4A9 486 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 THUMPD1Q9NXG2 353 aaKnown RBP11.36□□□□□ -0.59
SYNPO-204ENST00000519664 DLGAP4Q9Y2H0 992 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 PRSS51A0A1B0GVH4 220 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 ADAM12O43184 909 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 CH25HO95992 272 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 DNAJB1P25685 340 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 VBP1P61758 197 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 ZXDBP98169 803 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 BNC1Q01954 994 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 ABHD18Q0P651 414 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 ZNHIT3Q15649 155 aaPredicted RBP11.36□□□□□ -0.59
SYNPO-204ENST00000519664 DPY19L1Q2PZI1 675 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 ENPP6Q6UWR7 440 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 PRSS58Q8IYP2 241 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 CADM2Q8N3J6 435 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 RASSF5Q8WWW0 418 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 CITED4Q96RK1 184 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 OR51V1Q9H2C8 321 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 TRIT1Q9H3H1 467 aaKnown RBP11.36□□□□□ -0.59
SYNPO-204ENST00000519664 ITM2CQ9NQX7 267 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 CMTM6Q9NX76 183 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 SLAMF8Q9P0V8 285 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 ZNF221Q9UK13 617 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 KNTC1P50748 2209 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 CCDC182A6NF36 153 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 TEX28O15482 410 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 B4GAT1O43505 415 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 OR5F1O95221 314 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 C6orf47O95873 294 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 SOD2P04179 222 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 DNAJA1P31689 397 aaKnown RBP11.36□□□□□ -0.59
SYNPO-204ENST00000519664 HMGCLP35914 325 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 TMEM115Q12893 351 aaPredicted RBP11.36□□□□□ -0.59
SYNPO-204ENST00000519664 PACRGLQ8N7B6 248 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 C12orf76Q8N812 135 aaPredicted RBP11.36□□□□□ -0.59
SYNPO-204ENST00000519664 GRPEL2Q8TAA5 225 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 IL17FQ96PD4 163 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 TBX5Q99593 518 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 DIABLOQ9NR28 239 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 ZNF282Q9UDV7 671 aaPredicted RBP11.36□□□□□ -0.59
SYNPO-204ENST00000519664 GJD2Q9UKL4 321 aa11.36□□□□□ -0.59
SYNPO-204ENST00000519664 TRBC2A0A5B9 178 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 M0QZQ0 153 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 C9P02748 559 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 GNAO1P09471 354 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 HNMTP50135 292 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 CDK6Q00534 326 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 DUOXA1Q1HG43 343 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 CEACAM20Q6UY09 585 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 COMMD2Q86X83 199 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 HDDC3Q8N4P3 179 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 MARVELD2Q8N4S9 558 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 SLC38A4Q969I6 547 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 ZUFSPQ96AP4 578 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 SGIP1Q9BQI5 828 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 ST14Q9Y5Y6 855 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 OAS3Q9Y6K5 1087 aaKnown RBP11.35□□□□□ -0.59
SYNPO-204ENST00000519664 COL4A1P02462 1669 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 SIPA1L3O60292 1781 aaPredicted RBP11.35□□□□□ -0.59
SYNPO-204ENST00000519664 ANKRD36CQ5JPF3 1778 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 OR6A2O95222 327 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 CCNDBP1O95273 360 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 OXTRP30559 389 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 CD70P32970 193 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 IL18R1Q13478 541 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 ZFP69Q49AA0 526 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.35□□□□□ -0.59
SYNPO-204ENST00000519664 BRAT1Q6PJG6 821 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 VTCN1Q7Z7D3 282 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 IQCHQ86VS3 1027 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 NUS1Q96E22 293 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 SLC28A3Q9HAS3 691 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 CREBZFQ9NS37 354 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 TMEM30AQ9NV96 361 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 IL36AQ9UHA7 158 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 PGAP2Q9UHJ9 254 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 PCTPQ9UKL6 214 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 PDPK1O15530 556 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 ERI3O43414 337 aaKnown RBP11.35□□□□□ -0.59
SYNPO-204ENST00000519664 APOL3O95236 402 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 PAK4O96013 591 aaPredicted RBP11.35□□□□□ -0.59
SYNPO-204ENST00000519664 BPIP17213 487 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 ITPKBP27987 946 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 SLC6A4P31645 630 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 HTRA3P83110 453 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 PRAMEF14Q5SWL7 426 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 MORN1Q5T089 497 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 PRAMEF13Q5VWM6 474 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 TMIGD1Q6UXZ0 262 aa11.35□□□□□ -0.59
SYNPO-204ENST00000519664 MDGA1Q8NFP4 955 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms