RNA–Protein interactions for RNA: ENST00000494047.5

RFC4-214, Transcript of replication factor C subunit 4, humanhuman

TSL 2

Gene RFC4, Length 1,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-214ENST00000494047 HMGCS1Q01581 520 aa11.13□□□□□ -0.63
RFC4-214ENST00000494047 FCHO2Q0JRZ9 810 aa11.13□□□□□ -0.63
RFC4-214ENST00000494047 CPSF6Q16630 551 aaKnown RBP eCLIP11.13□□□□□ -0.63
RFC4-214ENST00000494047 MEP1AQ16819 746 aa11.13□□□□□ -0.63
RFC4-214ENST00000494047 PUS10Q3MIT2 529 aaKnown RBP11.13□□□□□ -0.63
RFC4-214ENST00000494047 FBXO48Q5FWF7 155 aa11.13□□□□□ -0.63
RFC4-214ENST00000494047 PAGE2BQ5JRK9 111 aa11.13□□□□□ -0.63
RFC4-214ENST00000494047 LDLRAP1Q5SW96 308 aa11.13□□□□□ -0.63
RFC4-214ENST00000494047 UBE2UQ5VVX9 321 aa11.13□□□□□ -0.63
RFC4-214ENST00000494047 FAHD1Q6P587 224 aa11.13□□□□□ -0.63
RFC4-214ENST00000494047 PRSS55Q6UWB4 352 aaPredicted RBP11.13□□□□□ -0.63
RFC4-214ENST00000494047 LINGO4Q6UY18 593 aa11.13□□□□□ -0.63
RFC4-214ENST00000494047 PRR23CQ6ZRP0 262 aa11.13□□□□□ -0.63
RFC4-214ENST00000494047 CYP2U1Q7Z449 544 aa11.13□□□□□ -0.63
RFC4-214ENST00000494047 AMER2Q8N7J2 671 aa11.13□□□□□ -0.63
RFC4-214ENST00000494047 PNPLA1Q8N8W4 532 aa11.13□□□□□ -0.63
RFC4-214ENST00000494047 TTC29Q8NA56 475 aaPredicted RBP11.13□□□□□ -0.63
RFC4-214ENST00000494047 C11orf65Q8NCR3 313 aa11.13□□□□□ -0.63
RFC4-214ENST00000494047 KBTBD8Q8NFY9 601 aa11.13□□□□□ -0.63
RFC4-214ENST00000494047 SPPL3Q8TCT6 385 aa11.13□□□□□ -0.63
RFC4-214ENST00000494047 UBE2E3Q969T4 207 aa11.13□□□□□ -0.63
RFC4-214ENST00000494047 SH3YL1Q96HL8 342 aaPredicted RBP11.13□□□□□ -0.63
RFC4-214ENST00000494047 PSD2Q9BQI7 771 aa11.13□□□□□ -0.63
RFC4-214ENST00000494047 TBCDQ9BTW9 1192 aa11.13□□□□□ -0.63
RFC4-214ENST00000494047 ZCCHC2Q9C0B9 1178 aaKnown RBP11.13□□□□□ -0.63
RFC4-214ENST00000494047 BHLHE41Q9C0J9 482 aaPredicted RBP11.13□□□□□ -0.63
RFC4-214ENST00000494047 MMP27Q9H306 513 aa11.13□□□□□ -0.63
RFC4-214ENST00000494047 EHD1Q9H4M9 534 aa11.13□□□□□ -0.63
RFC4-214ENST00000494047 SUV39H2Q9H5I1 410 aa11.13□□□□□ -0.63
RFC4-214ENST00000494047 PIF1Q9H611 641 aa11.13□□□□□ -0.63
RFC4-214ENST00000494047 SP140LQ9H930 580 aa11.13□□□□□ -0.63
RFC4-214ENST00000494047 CPNE5Q9HCH3 593 aa11.13□□□□□ -0.63
RFC4-214ENST00000494047 MRPL17Q9NRX2 175 aaKnown RBP11.13□□□□□ -0.63
RFC4-214ENST00000494047 PPT2Q9UMR5 302 aa11.13□□□□□ -0.63
RFC4-214ENST00000494047 VPS4AQ9UN37 437 aa11.13□□□□□ -0.63
RFC4-214ENST00000494047 POFUT2Q9Y2G5 429 aa11.13□□□□□ -0.63
RFC4-214ENST00000494047 FNDC3AQ9Y2H6 1198 aaKnown RBP11.13□□□□□ -0.63
RFC4-214ENST00000494047 SAMHD1Q9Y3Z3 626 aaKnown RBP11.13□□□□□ -0.63
RFC4-214ENST00000494047 MN1Q10571 1320 aaPredicted RBP11.13□□□□□ -0.63
RFC4-214ENST00000494047 PRUNE2Q8WUY3 3088 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 OBSL1O75147 1896 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 PIKFYVEQ9Y2I7 2098 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 hCG_2014768A0A024R1R8 64 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 TRAV19A0A0A6YYK7 116 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 WASH3PC4AMC7 463 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 RNASET2O00584 256 aaKnown RBP11.12□□□□□ -0.63
RFC4-214ENST00000494047 ZSCAN9O15535 394 aaPredicted RBP11.12□□□□□ -0.63
RFC4-214ENST00000494047 SUV39H1O43463 412 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 FGF18O76093 207 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 CLDN7O95471 211 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 ZNF682O95780 498 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 MT-ND1P03886 318 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 ALPIP09923 528 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 COX7A2P14406 83 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 IL7RP16871 459 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 PTPN6P29350 595 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 PIGAP37287 484 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 SGSHP51688 502 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 IRF8Q02556 426 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 LAPTM5Q13571 262 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 E2F2Q14209 437 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 COL19A1Q14993 1142 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 OXA1LQ15070 435 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 CTF1Q16619 201 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 ATXN7L2Q5T6C5 722 aaPredicted RBP11.12□□□□□ -0.63
RFC4-214ENST00000494047 C22orf39Q6P5X5 142 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 DOK6Q6PKX4 331 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 UNC5DQ6UXZ4 953 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 CCDC149Q6ZUS6 474 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 GPR155Q7Z3F1 870 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 DNAJB7Q7Z6W7 309 aaPredicted RBP11.12□□□□□ -0.63
RFC4-214ENST00000494047 SLCO6A1Q86UG4 719 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 PLD3Q8IV08 490 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 RASGRP3Q8IV61 690 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 TRAM1L1Q8N609 369 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 DCBLD1Q8N8Z6 715 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 ATG16L2Q8NAA4 619 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 GALNT6Q8NCL4 622 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 DENND6BQ8NEG7 585 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 NETO1Q8TDF5 533 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 POF1BQ8WVV4 589 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 FAR1Q8WVX9 515 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 CRELD1Q96HD1 420 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 HRASLS5Q96KN8 279 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 ITPAQ9BY32 194 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 TRIM8Q9BZR9 551 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 CCDC90BQ9GZT6 254 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 TNKS2Q9H2K2 1166 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 EPHX3Q9H6B9 360 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 SMURF2Q9HAU4 748 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 AKIP1Q9NQ31 210 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 SPATA6Q9NWH7 488 aaPredicted RBP11.12□□□□□ -0.63
RFC4-214ENST00000494047 SPG21Q9NZD8 308 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 EVLQ9UI08 416 aaPredicted RBP11.12□□□□□ -0.63
RFC4-214ENST00000494047 TSC22D4Q9Y3Q8 395 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 ZNF451Q9Y4E5 1061 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 UGT2A1Q9Y4X1 527 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 INSL5Q9Y5Q6 135 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 ANKRD12Q6UB98 2062 aa11.12□□□□□ -0.63
RFC4-214ENST00000494047 EYSQ5T1H1 3165 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms