RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 LTBP4Q8N2S1 1624 aa5.26□□□□□ -1.57
USP40-213ENST00000483216 DIP2AQ14689 1571 aa5.26□□□□□ -1.57
USP40-213ENST00000483216 SNED1Q8TER0 1413 aa5.26□□□□□ -1.57
USP40-213ENST00000483216 A0A1B0GUA9 196 aa5.26□□□□□ -1.57
USP40-213ENST00000483216 A0A1W2PPQ1 181 aa5.26□□□□□ -1.57
USP40-213ENST00000483216 KINO60870 393 aaKnown RBP5.26□□□□□ -1.57
USP40-213ENST00000483216 DFFBO76075 338 aa5.26□□□□□ -1.57
USP40-213ENST00000483216 IGHV2-70P01814 119 aa5.26□□□□□ -1.57
USP40-213ENST00000483216 RAF1P04049 648 aa5.26□□□□□ -1.57
USP40-213ENST00000483216 SERPINB2P05120 415 aa5.26□□□□□ -1.57
USP40-213ENST00000483216 ADRB2P07550 413 aa5.26□□□□□ -1.57
USP40-213ENST00000483216 LDHCP07864 332 aa5.26□□□□□ -1.57
USP40-213ENST00000483216 PNMA6AP0CW24 399 aaPredicted RBP5.26□□□□□ -1.57
USP40-213ENST00000483216 IGHV4-31P0DP07 118 aa5.26□□□□□ -1.57
USP40-213ENST00000483216 HILS1P60008 231 aa5.26□□□□□ -1.57
USP40-213ENST00000483216 SMC1AQ14683 1233 aaKnown RBP5.26□□□□□ -1.57
USP40-213ENST00000483216 RRS1Q15050 365 aaKnown RBP5.26□□□□□ -1.57
USP40-213ENST00000483216 ZFP69Q49AA0 526 aa5.26□□□□□ -1.57
USP40-213ENST00000483216 SPDYCQ5MJ68 293 aa5.26□□□□□ -1.57
USP40-213ENST00000483216 PRR27Q6MZM9 219 aa5.26□□□□□ -1.57
USP40-213ENST00000483216 CAMKMTQ7Z624 323 aa5.26□□□□□ -1.57
USP40-213ENST00000483216 TMPRSS11BQ86T26 416 aa5.26□□□□□ -1.57
USP40-213ENST00000483216 DYRK2Q92630 601 aa5.26□□□□□ -1.57
USP40-213ENST00000483216 PRAC1Q96KF2 57 aa5.26□□□□□ -1.57
USP40-213ENST00000483216 LRRCC1Q9C099 1032 aa5.26□□□□□ -1.57
USP40-213ENST00000483216 MIS12Q9H081 205 aa5.26□□□□□ -1.57
USP40-213ENST00000483216 CPVLQ9H3G5 476 aa5.26□□□□□ -1.57
USP40-213ENST00000483216 CLSTN2Q9H4D0 955 aa5.26□□□□□ -1.57
USP40-213ENST00000483216 HMG20BQ9P0W2 317 aa5.26□□□□□ -1.57
USP40-213ENST00000483216 POLKQ9UBT6 870 aa5.26□□□□□ -1.57
USP40-213ENST00000483216 MRPS28Q9Y2Q9 187 aaKnown RBP5.26□□□□□ -1.57
USP40-213ENST00000483216 RRP15Q9Y3B9 282 aaKnown RBP5.26□□□□□ -1.57
USP40-213ENST00000483216 ARHGEF10O15013 1369 aa5.26□□□□□ -1.57
USP40-213ENST00000483216 NRKQ7Z2Y5 1582 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 GOLGA6L7A0A1B0GV03 622 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 NEMP2A6NFY4 417 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 KIAA0754O94854 1291 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 GPIP06744 558 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 RAB40ALP0C0E4 278 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 SMIM18P0DKX4 95 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 CAPN2P17655 700 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 SYT1P21579 422 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 HSPA4P34932 840 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 MNDAP41218 407 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 RAD52P43351 418 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 BMXP51813 675 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 SH3BGRP55822 239 aaPredicted RBP5.25□□□□□ -1.57
USP40-213ENST00000483216 MAZP56270 477 aaKnown RBP5.25□□□□□ -1.57
USP40-213ENST00000483216 IRX1P78414 480 aaPredicted RBP5.25□□□□□ -1.57
USP40-213ENST00000483216 PPARDQ03181 441 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 IFFO1Q0D2I5 559 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 DRP2Q13474 957 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 ALCAMQ13740 583 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 ZKSCAN8Q15776 578 aaPredicted RBP5.25□□□□□ -1.57
USP40-213ENST00000483216 ODF4Q2M2E3 257 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 TWISTNBQ3B726 338 aaPredicted RBP5.25□□□□□ -1.57
USP40-213ENST00000483216 PDLIM3Q53GG5 364 aaPredicted RBP5.25□□□□□ -1.57
USP40-213ENST00000483216 KLHL26Q53HC5 615 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 C9orf152Q5JTZ5 239 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 ADAMTSL4-AS1Q5T5F5 129 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 NAA16Q6N069 864 aaPredicted RBP5.25□□□□□ -1.57
USP40-213ENST00000483216 C11orf63Q6NUN7 778 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 C16orf54Q6UWD8 224 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 CLEC4GQ6UXB4 293 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 LSMEM2Q8N112 164 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 SPC24Q8NBT2 197 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 OR11H4Q8NGC9 324 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 OR4C3Q8NH37 302 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 OR52N5Q8NH56 324 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 TEKT4Q8WW24 435 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 SUSD6Q92537 303 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 COG3Q96JB2 828 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 ART5Q96L15 291 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 PAIP2Q9BPZ3 127 aaKnown RBP5.25□□□□□ -1.57
USP40-213ENST00000483216 LLPHQ9BRT6 129 aaKnown RBP5.25□□□□□ -1.57
USP40-213ENST00000483216 UPF3BQ9BZI7 483 aaKnown RBP5.25□□□□□ -1.57
USP40-213ENST00000483216 GFRA4Q9GZZ7 299 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 ERVMER34-1Q9H9K5 563 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 TMEM181Q9P2C4 612 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 SLC24A2Q9UI40 661 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 KIAA0232Q92628 1395 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 RPAP1Q9BWH6 1393 aaPredicted RBP5.25□□□□□ -1.57
USP40-213ENST00000483216 PLEKHG2Q9H7P9 1386 aa5.25□□□□□ -1.57
USP40-213ENST00000483216 SIPA1L2Q9P2F8 1722 aaPredicted RBP5.25□□□□□ -1.57
USP40-213ENST00000483216 A0A1W2PPM1 405 aa5.24□□□□□ -1.57
USP40-213ENST00000483216 CCDC69A6NI79 296 aa5.24□□□□□ -1.57
USP40-213ENST00000483216 VGLL3A8MV65 326 aa5.24□□□□□ -1.57
USP40-213ENST00000483216 HMGB1P1B2RPK0 211 aaPredicted RBP5.24□□□□□ -1.57
USP40-213ENST00000483216 KHDRBS3O75525 346 aaKnown RBP5.24□□□□□ -1.57
USP40-213ENST00000483216 ZNF821O75541 412 aaPredicted RBP5.24□□□□□ -1.57
USP40-213ENST00000483216 CDC123O75794 336 aaPredicted RBP5.24□□□□□ -1.57
USP40-213ENST00000483216 PTPN3P26045 913 aa5.24□□□□□ -1.57
USP40-213ENST00000483216 PRKAR2BP31323 418 aa5.24□□□□□ -1.57
USP40-213ENST00000483216 NF2P35240 595 aa5.24□□□□□ -1.57
USP40-213ENST00000483216 MNAT1P51948 309 aa5.24□□□□□ -1.57
USP40-213ENST00000483216 GSCP56915 257 aaPredicted RBP5.24□□□□□ -1.57
USP40-213ENST00000483216 ZNF415Q09FC8 603 aa5.24□□□□□ -1.57
USP40-213ENST00000483216 TMEM187Q14656 261 aa5.24□□□□□ -1.57
USP40-213ENST00000483216 CA9Q16790 459 aa5.24□□□□□ -1.57
USP40-213ENST00000483216 MFSD12Q6NUT3 480 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms