RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 LMNTD2Q8IXW0 634 aa11.62□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 SHISA5Q8N114 240 aa11.62□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 NAT8LQ8N9F0 302 aa11.62□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 BRIX1Q8TDN6 353 aaKnown RBP11.62□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 TM4SF19Q96DZ7 209 aa11.62□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 DRC3Q9H069 523 aa11.62□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 RNF32Q9H0A6 362 aa11.62□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 FBXO6Q9NRD1 293 aaPredicted RBP11.62□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 TMEM184CQ9NVA4 438 aa11.62□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 UTP6Q9NYH9 597 aaKnown RBP11.62□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 COMMD10Q9Y6G5 202 aa11.62□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 GTF3C1Q12789 2109 aa11.62□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 A0A0A6YYC8 382 aaPredicted RBP11.61□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 H7BY64 318 aa11.61□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 I3L1I5 382 aaPredicted RBP11.61□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 SMAPO00193 183 aa11.61□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 FFAR3O14843 346 aa11.61□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 GPR42O15529 346 aa11.61□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 LRRTM2O43300 516 aa11.61□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 ZBTB14O43829 449 aa11.61□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 KIF5CO60282 957 aa11.61□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 HAUS5O94927 633 aa11.61□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 CELA2AP08217 269 aa11.61□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 CYC1P08574 325 aa11.61□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 ERVK-10P10266 1014 aa11.61□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 HRH2P25021 359 aa11.61□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 COILP38432 576 aaPredicted RBP11.61□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 VPS41P49754 854 aa11.61□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 CUL1Q13616 776 aa11.61□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 SYT16Q17RD7 645 aa11.61□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 ZXDCQ2QGD7 858 aaPredicted RBP11.61□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 TTLL9Q3SXZ7 439 aa11.61□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 H3F3CQ6NXT2 135 aa11.61□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 PCGF5Q86SE9 256 aa11.61□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 OR1N1Q8NGS0 311 aa11.61□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 RELTQ969Z4 430 aa11.61□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 ZNF669Q96BR6 464 aaPredicted RBP11.61□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 MMABQ96EY8 250 aaPredicted RBP11.61□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 CNDP1Q96KN2 507 aa11.61□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 PRAP1Q96NZ9 151 aa11.61□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 GPR21Q99679 349 aa11.61□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 EBNA1BP2Q99848 306 aaKnown RBP11.61□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 AARSD1Q9BTE6 412 aaKnown RBP11.61□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 PLA2G3Q9NZ20 509 aa11.61□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 SAMD15Q9P1V8 674 aa11.61□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 PCYOX1Q9UHG3 505 aa11.61□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 FBXO5Q9UKT4 447 aa11.61□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 PKDREJQ9NTG1 2253 aa11.6□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 TRAV17A0A0B4J275 112 aa11.6□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 CTAGE9A4FU28 777 aa11.6□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 H0YIG0 161 aa11.6□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 NSA2O95478 260 aaKnown RBP11.6□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 HEXBP07686 556 aa11.6□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 ITGAMP11215 1152 aa11.6□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 ICAM2P13598 275 aa11.6□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 GABRB3P28472 473 aa11.6□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 TERF1P54274 439 aa11.6□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 CSNK1G2P78368 415 aa11.6□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 THOC5Q13769 683 aaKnown RBP11.6□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 ZRSR2Q15696 482 aaKnown RBP11.6□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 INAQ16352 499 aa11.6□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 LONRF1Q17RB8 773 aa11.6□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 TMEM214Q6NUQ4 689 aaKnown RBP11.6□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 CASC4Q6P4E1 433 aa11.6□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 PIWIL4Q7Z3Z4 852 aaKnown RBP11.6□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 PLD3Q8IV08 490 aa11.6□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 BCORP1Q8N888 145 aa11.6□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 C2CD4AQ8NCU7 369 aaPredicted RBP11.6□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 ANP32BQ92688 251 aaKnown RBP11.6□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 RERGQ96A58 199 aaPredicted RBP11.6□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 MAGOHBQ96A72 148 aaKnown RBP11.6□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 THAP11Q96EK4 314 aa11.6□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 MS4A14Q96JA4 679 aa11.6□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 PBKQ96KB5 322 aa11.6□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 CYTH2Q99418 400 aa11.6□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 SARGQ9BW04 601 aa11.6□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 VN1R1Q9GZP7 353 aa11.6□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 RIC8BQ9NVN3 520 aa11.6□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 PTGFRNQ9P2B2 879 aa11.6□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 PDE10AQ9Y233 779 aa11.6□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 OSGIN2Q9Y236 505 aa11.6□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 PPP2R2CQ9Y2T4 447 aa11.6□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 JRKLQ9Y4A0 524 aa11.6□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 GOLGA8MH3BSY2 632 aa11.59□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 LCMT2O60294 686 aaKnown RBP11.59□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 JRKO75564 520 aa11.59□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 WDPCPO95876 746 aa11.59□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 ANXA5P08758 320 aa11.59□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 CXCR2P25025 360 aa11.59□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 ARG2P78540 354 aa11.59□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 MPP1Q00013 466 aa11.59□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 MAT1AQ00266 395 aaKnown RBP11.59□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 EEF1A2Q05639 463 aaKnown RBP11.59□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 HSP90AA5PQ58FG0 334 aa11.59□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 RNASEH2BQ5TBB1 312 aaKnown RBP11.59□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 C1QL3Q5VWW1 255 aa11.59□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 CCDC137Q6PK04 289 aaKnown RBP11.59□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 FAM180AQ6UWF9 173 aa11.59□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 PRSS41Q7RTY9 318 aa11.59□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 CPNE9Q8IYJ1 553 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms