RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 AGBL5Q8NDL9 886 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 ZNF740Q8NDX6 193 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 ABHD11Q8NFV4 315 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 OR4K1Q8NGD4 311 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 WDR36Q8NI36 951 aaKnown RBP6.7□□□□□ -1.34
LIMD1-204ENST00000474665 NEIL2Q969S2 332 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 ALKBH8Q96BT7 664 aaKnown RBP6.7□□□□□ -1.34
LIMD1-204ENST00000474665 GRAMD1AQ96CP6 724 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 TLCD1Q96CP7 247 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 PGM2Q96G03 612 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 CABS1Q96KC9 395 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 HIST1H2AHQ96KK5 128 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 ZNF578Q96N58 590 aaPredicted RBP6.7□□□□□ -1.34
LIMD1-204ENST00000474665 ZNF285Q96NJ3 590 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 SLC46A1Q96NT5 459 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 PRAP1Q96NZ9 151 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 NSUN5Q96P11 429 aaKnown RBP6.7□□□□□ -1.34
LIMD1-204ENST00000474665 HIST1H2AJQ99878 128 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 CTRCQ99895 268 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 EGFL8Q99944 293 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 PLCD4Q9BRC7 762 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 H2AFJQ9BTM1 129 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 TRIM54Q9BYV2 358 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 CD244Q9BZW8 370 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 MRPL46Q9H2W6 279 aaKnown RBP6.7□□□□□ -1.34
LIMD1-204ENST00000474665 POLR1BQ9H9Y6 1135 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 TMBIM4Q9HC24 238 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 ZBTB26Q9HCK0 441 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 CCDC177Q9NQR7 707 aaPredicted RBP6.7□□□□□ -1.34
LIMD1-204ENST00000474665 ABCF3Q9NUQ8 709 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 MKS1Q9NXB0 559 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 CD274Q9NZQ7 290 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 SLC17A7Q9P2U7 560 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 PISDQ9UG56 409 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 SSUH2Q9Y2M2 353 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 PLLPQ9Y342 182 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 PRRC2CQ9Y520 2896 aaKnown RBP6.69□□□□□ -1.34
LIMD1-204ENST00000474665 A8MT66 165 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 CDRT15L2A8MXV6 281 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 B4E171 279 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 TMX2-CTNND1H3BSU7 103 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 E2F3O00716 465 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 HAT1O14929 419 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 RGS16O15492 202 aaPredicted RBP6.69□□□□□ -1.34
LIMD1-204ENST00000474665 P2RX6O15547 441 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 LCMT2O60294 686 aaKnown RBP6.69□□□□□ -1.34
LIMD1-204ENST00000474665 KDM1AO60341 852 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 SPAG7O75391 227 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 STK16O75716 305 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 WFS1O76024 890 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 DXOO77932 396 aaKnown RBP6.69□□□□□ -1.34
LIMD1-204ENST00000474665 WDR47O94967 919 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 FKBP9O95302 570 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 TBX6O95947 436 aaPredicted RBP6.69□□□□□ -1.34
LIMD1-204ENST00000474665 RPS17P08708 135 aaKnown RBP6.69□□□□□ -1.34
LIMD1-204ENST00000474665 FAM87AP0C7U9 286 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 MSL3P1P0C860 447 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 CDH1P12830 882 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 ZNF28P17035 718 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 VARSP26640 1264 aaKnown RBP6.69□□□□□ -1.34
LIMD1-204ENST00000474665 COL8A1P27658 744 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 CSTF2P33240 577 aaKnown RBP eCLIP6.69□□□□□ -1.34
LIMD1-204ENST00000474665 TSPAN7P41732 249 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 ETV4P43268 484 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 HNMTP50135 292 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 ALDH18A1P54886 795 aaKnown RBP6.69□□□□□ -1.34
LIMD1-204ENST00000474665 GABREP78334 506 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 MEF2AQ02078 507 aaPredicted RBP6.69□□□□□ -1.34
LIMD1-204ENST00000474665 PCDH1Q08174 1060 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 EIF3IQ13347 325 aaKnown RBP6.69□□□□□ -1.34
LIMD1-204ENST00000474665 E2F2Q14209 437 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 PCBP2Q15366 365 aaKnown RBP eCLIP6.69□□□□□ -1.34
LIMD1-204ENST00000474665 UNC50Q53HI1 259 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 TTMPQ5BVD1 217 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 ADNP2Q6IQ32 1131 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 CAPN13Q6MZZ7 669 aaPredicted RBP6.69□□□□□ -1.34
LIMD1-204ENST00000474665 KLC3Q6P597 504 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 IGF2-ASQ6U949 168 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 CCDC81Q6ZN84 652 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 FRA10AC1Q70Z53 315 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 RNF44Q7L0R7 432 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 VN1R4Q7Z5H5 301 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 LCA5Q86VQ0 697 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 FAM129CQ86XR2 697 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 SHISA5Q8N114 240 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 RAB42Q8N4Z0 105 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 DTWD1Q8N5C7 304 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 PTGR2Q8N8N7 351 aaPredicted RBP6.69□□□□□ -1.34
LIMD1-204ENST00000474665 SLC38A9Q8NBW4 561 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 OR1L3Q8NH93 324 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 ATL1Q8WXF7 558 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 EXTL1Q92935 676 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 USP7Q93009 1102 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 ZUFSPQ96AP4 578 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 SLC22A18Q96BI1 424 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 ZNF501Q96CX3 271 aaPredicted RBP6.69□□□□□ -1.34
LIMD1-204ENST00000474665 PHF21BQ96EK2 531 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 TCTN2Q96GX1 697 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 APOPT1Q96IL0 206 aa6.69□□□□□ -1.34
LIMD1-204ENST00000474665 SCYL1Q96KG9 808 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms