RNA–Protein interactions for RNA: ENST00000397204.8

CAPN3-208, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,237 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-208ENST00000397204 TRPC4Q9UBN4 977 aa8.32□□□□□ -1.08
CAPN3-208ENST00000397204 SEC14L3Q9UDX4 400 aa8.32□□□□□ -1.08
CAPN3-208ENST00000397204 TEKT2Q9UIF3 430 aa8.32□□□□□ -1.08
CAPN3-208ENST00000397204 TCAF1Q9Y4C2 921 aa8.32□□□□□ -1.08
CAPN3-208ENST00000397204 NIPBLQ6KC79 2804 aaeCLIP8.32□□□□□ -1.08
CAPN3-208ENST00000397204 SNRNP200O75643 2136 aaKnown RBP8.32□□□□□ -1.08
CAPN3-208ENST00000397204 PCM1Q15154 2024 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 A0A1W2PPV9 198 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 SHISA8B8ZZ34 492 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 E7EVH7 732 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 H0YGG7 62 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 VPS26AO75436 327 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 NDUFS3O75489 264 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 WDPCPO95876 746 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 UQCRHP07919 91 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 COX6B1P14854 86 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 RPS3P23396 243 aaKnown RBP eCLIP8.31□□□□□ -1.08
CAPN3-208ENST00000397204 HSD17B2P37059 387 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 GRIA1P42261 906 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 GSK3AP49840 483 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 CASP6P55212 293 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 ARF3P61204 181 aaPredicted RBP8.31□□□□□ -1.08
CAPN3-208ENST00000397204 SEMA3AQ14563 771 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 LONRF1Q17RB8 773 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 KRTCAP3Q53RY4 240 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 PCID2Q5JVF3 399 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 ABHD17BQ5VST6 288 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 LRRC8BQ6P9F7 803 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 TMEM205Q6UW68 189 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 PEX26Q7Z412 305 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 SYCE1Q8N0S2 351 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 KRT222Q8N1A0 295 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 MPP5Q8N3R9 675 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 TAB3Q8N5C8 712 aaPredicted RBP8.31□□□□□ -1.08
CAPN3-208ENST00000397204 GOLGA6L1Q8N7Z2 621 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 LKAAEAR1Q8TD35 194 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 SKA2Q8WVK7 121 aaPredicted RBP8.31□□□□□ -1.08
CAPN3-208ENST00000397204 EDARADDQ8WWZ3 215 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 SMPDL3AQ92484 453 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 CCDC120Q96HB5 630 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 CABS1Q96KC9 395 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 LURAP1Q96LR2 239 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 IMMP1LQ96LU5 166 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 C10orf90Q96M02 699 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 PANX2Q96RD6 677 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 PLCD4Q9BRC7 762 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 TUBB6Q9BUF5 446 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 FRMD8P1Q9BZ68 369 aaPredicted RBP8.31□□□□□ -1.08
CAPN3-208ENST00000397204 P2RY12Q9H244 342 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 TSPY26PQ9H489 355 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 CHRAC1Q9NRG0 131 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 CATSPERZQ9NTU4 200 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 UTP6Q9NYH9 597 aaKnown RBP8.31□□□□□ -1.08
CAPN3-208ENST00000397204 SPATA7Q9P0W8 599 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 GNPTGQ9UJJ9 305 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 R3HDM2Q9Y2K5 976 aaKnown RBP8.31□□□□□ -1.08
CAPN3-208ENST00000397204 PCDHGB6Q9Y5F9 930 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 NFS1Q9Y697 457 aa8.31□□□□□ -1.08
CAPN3-208ENST00000397204 GRID2IPA4D2P6 1211 aa8.3□□□□□ -1.08
CAPN3-208ENST00000397204 OR5H15A6NDH6 313 aa8.3□□□□□ -1.08
CAPN3-208ENST00000397204 AP3B1O00203 1094 aa8.3□□□□□ -1.08
CAPN3-208ENST00000397204 PRAMEF2O60811 474 aa8.3□□□□□ -1.08
CAPN3-208ENST00000397204 MATN4O95460 622 aa8.3□□□□□ -1.08
CAPN3-208ENST00000397204 MLYCDO95822 493 aa8.3□□□□□ -1.08
CAPN3-208ENST00000397204 CYC1P08574 325 aa8.3□□□□□ -1.08
CAPN3-208ENST00000397204 ANXA5P08758 320 aa8.3□□□□□ -1.08
CAPN3-208ENST00000397204 ARAFP10398 606 aa8.3□□□□□ -1.08
CAPN3-208ENST00000397204 ITGAMP11215 1152 aa8.3□□□□□ -1.08
CAPN3-208ENST00000397204 CAPN3P20807 821 aa8.3□□□□□ -1.08
CAPN3-208ENST00000397204 MST1P26927 711 aa8.3□□□□□ -1.08
CAPN3-208ENST00000397204 PSMB5P28074 263 aa8.3□□□□□ -1.08
CAPN3-208ENST00000397204 ATP5DP30049 168 aa8.3□□□□□ -1.08
CAPN3-208ENST00000397204 NPY2RP49146 381 aa8.3□□□□□ -1.08
CAPN3-208ENST00000397204 SMSP52788 366 aa8.3□□□□□ -1.08
CAPN3-208ENST00000397204 PRDX1Q06830 199 aaKnown RBP8.3□□□□□ -1.08
CAPN3-208ENST00000397204 FAM53BQ14153 422 aa8.3□□□□□ -1.08
CAPN3-208ENST00000397204 ARHGAP19Q14CB8 494 aa8.3□□□□□ -1.08
CAPN3-208ENST00000397204 CCSMST1Q4G0I0 132 aa8.3□□□□□ -1.08
CAPN3-208ENST00000397204 ANKRD20A4Q4UJ75 823 aa8.3□□□□□ -1.08
CAPN3-208ENST00000397204 SDCCAG8Q86SQ7 713 aaPredicted RBP8.3□□□□□ -1.08
CAPN3-208ENST00000397204 LDB1Q86U70 411 aaPredicted RBP8.3□□□□□ -1.08
CAPN3-208ENST00000397204 CSNK1A1LQ8N752 337 aa8.3□□□□□ -1.08
CAPN3-208ENST00000397204 AMER3Q8N944 861 aa8.3□□□□□ -1.08
CAPN3-208ENST00000397204 PPHLN1Q8NEY8 458 aaKnown RBP8.3□□□□□ -1.08
CAPN3-208ENST00000397204 OR9A1PQ8NGU1 263 aa8.3□□□□□ -1.08
CAPN3-208ENST00000397204 THAP3Q8WTV1 239 aaPredicted RBP8.3□□□□□ -1.08
CAPN3-208ENST00000397204 METTL21AQ8WXB1 218 aa8.3□□□□□ -1.08
CAPN3-208ENST00000397204 RERGQ96A58 199 aaPredicted RBP8.3□□□□□ -1.08
CAPN3-208ENST00000397204 MMABQ96EY8 250 aaPredicted RBP8.3□□□□□ -1.08
CAPN3-208ENST00000397204 ZNF354BQ96LW1 612 aa8.3□□□□□ -1.08
CAPN3-208ENST00000397204 OR2A5Q96R48 311 aa8.3□□□□□ -1.08
CAPN3-208ENST00000397204 TCF12Q99081 682 aa8.3□□□□□ -1.08
CAPN3-208ENST00000397204 ACAT2Q9BWD1 397 aa8.3□□□□□ -1.08
CAPN3-208ENST00000397204 TRIM5Q9C035 493 aa8.3□□□□□ -1.08
CAPN3-208ENST00000397204 LACRTQ9GZZ8 138 aa8.3□□□□□ -1.08
CAPN3-208ENST00000397204 MRPS30Q9NP92 439 aaKnown RBP8.3□□□□□ -1.08
CAPN3-208ENST00000397204 MARCH4Q9P2E8 410 aaPredicted RBP8.3□□□□□ -1.08
CAPN3-208ENST00000397204 STOX2Q9P2F5 926 aaPredicted RBP8.3□□□□□ -1.08
CAPN3-208ENST00000397204 ZNF148Q9UQR1 794 aa8.3□□□□□ -1.08
CAPN3-208ENST00000397204 AKAP9Q99996 3911 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms