RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 SLC19A1P41440 591 aa9.85□□□□□ -0.83
VPS53-202ENST00000389040 ID4P47928 161 aa9.85□□□□□ -0.83
VPS53-202ENST00000389040 IRX1P78414 480 aaPredicted RBP9.85□□□□□ -0.83
VPS53-202ENST00000389040 BOP1Q14137 746 aaKnown RBP9.85□□□□□ -0.83
VPS53-202ENST00000389040 CLCA4Q14CN2 919 aa9.85□□□□□ -0.83
VPS53-202ENST00000389040 GSTA3Q16772 222 aa9.85□□□□□ -0.83
VPS53-202ENST00000389040 XKR7Q5GH72 579 aa9.85□□□□□ -0.83
VPS53-202ENST00000389040 XKR5Q6UX68 686 aa9.85□□□□□ -0.83
VPS53-202ENST00000389040 HACD2Q6Y1H2 254 aa9.85□□□□□ -0.83
VPS53-202ENST00000389040 RNF111Q6ZNA4 994 aa9.85□□□□□ -0.83
VPS53-202ENST00000389040 FUNDC1Q8IVP5 155 aa9.85□□□□□ -0.83
VPS53-202ENST00000389040 RNF148Q8N7C7 305 aa9.85□□□□□ -0.83
VPS53-202ENST00000389040 IFI44Q8TCB0 444 aa9.85□□□□□ -0.83
VPS53-202ENST00000389040 ESAMQ96AP7 390 aa9.85□□□□□ -0.83
VPS53-202ENST00000389040 SLC38A3Q99624 504 aa9.85□□□□□ -0.83
VPS53-202ENST00000389040 ABCG4Q9H172 646 aa9.85□□□□□ -0.83
VPS53-202ENST00000389040 PFDN4Q9NQP4 134 aa9.85□□□□□ -0.83
VPS53-202ENST00000389040 SDR39U1Q9NRG7 319 aaPredicted RBP9.85□□□□□ -0.83
VPS53-202ENST00000389040 ADA2Q9NZK5 511 aa9.85□□□□□ -0.83
VPS53-202ENST00000389040 ZNF624Q9P2J8 865 aaPredicted RBP9.85□□□□□ -0.83
VPS53-202ENST00000389040 WDR37Q9Y2I8 494 aa9.85□□□□□ -0.83
VPS53-202ENST00000389040 LRCH1Q9Y2L9 728 aa9.85□□□□□ -0.83
VPS53-202ENST00000389040 E7ENX8 843 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 BCAS2O75934 225 aaPredicted RBP9.84□□□□□ -0.83
VPS53-202ENST00000389040 MATN4O95460 622 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 PRR35P0CG20 571 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 MPC1LP0DKB6 136 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 NME5P56597 212 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 SIM1P81133 766 aaPredicted RBP9.84□□□□□ -0.83
VPS53-202ENST00000389040 KRT33BQ14525 404 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 PCBP2Q15366 365 aaKnown RBP eCLIP9.84□□□□□ -0.835e-9■■■■■ 51.4
VPS53-202ENST00000389040 OGFOD2Q6N063 350 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 IZUMO2Q6UXV1 221 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 TMEM26Q6ZUK4 368 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 SPATA19Q7Z5L4 167 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 PDPRQ8NCN5 879 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 FBXO15Q8NCQ5 510 aaPredicted RBP9.84□□□□□ -0.83
VPS53-202ENST00000389040 OR10G6Q8NH81 332 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 OR5K2Q8NHB8 316 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 C12orf66Q96MD2 445 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 INSM2Q96T92 566 aaPredicted RBP9.84□□□□□ -0.83
VPS53-202ENST00000389040 CCT7Q99832 543 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 RAB33BQ9H082 229 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 TRIT1Q9H3H1 467 aaKnown RBP9.84□□□□□ -0.83
VPS53-202ENST00000389040 KIR3DX1Q9H7L2 352 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 SPAG4Q9NPE6 437 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 BATF3Q9NR55 127 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 ADAMTS6Q9UKP5 1117 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 OARD1Q9Y530 152 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 RNF215Q9Y6U7 377 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 CABIN1Q9Y6J0 2220 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 NR5A2O00482 541 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 PPM1DO15297 605 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 SLC16A5O15375 505 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 EML2O95834 649 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 PDHA2P29803 388 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 MSX2P35548 267 aaPredicted RBP9.84□□□□□ -0.83
VPS53-202ENST00000389040 HSD17B2P37059 387 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 ERVPABLB-1P60509 514 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 MS4A2Q01362 244 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 C18orf21Q32NC0 220 aaPredicted RBP9.84□□□□□ -0.83
VPS53-202ENST00000389040 C8orf82Q6P1X6 216 aaPredicted RBP9.84□□□□□ -0.83
VPS53-202ENST00000389040 ZFP1Q6P2D0 407 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 GUSBP11Q6P575 273 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 WDR74Q6RFH5 385 aaPredicted RBP9.84□□□□□ -0.83
VPS53-202ENST00000389040 GOLGA7Q7Z5G4 137 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 TMPRSS12Q86WS5 348 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 CARFQ8N187 725 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 GALNT15Q8N3T1 639 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 RAB42Q8N4Z0 105 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 CDYL2Q8N8U2 506 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 PCYOX1LQ8NBM8 494 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 BHLHE22Q8NFJ8 381 aaPredicted RBP9.84□□□□□ -0.83
VPS53-202ENST00000389040 OR52B6Q8NGF0 335 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 ADAMTS14Q8WXS8 1223 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 DLG3Q92796 817 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 ROPN1LQ96C74 230 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 ASB9Q96DX5 294 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 ECSITQ9BQ95 431 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 CCDC3Q9BQI4 270 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 RAB11FIP5Q9BXF6 653 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 VCX3BQ9H321 246 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 NOL11Q9H8H0 719 aaKnown RBP9.84□□□□□ -0.83
VPS53-202ENST00000389040 TOR4AQ9NXH8 423 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 SCHIP1Q9P0W5 487 aaPredicted RBP9.84□□□□□ -0.83
VPS53-202ENST00000389040 SUCOQ9UBS9 1254 aaKnown RBP9.84□□□□□ -0.83
VPS53-202ENST00000389040 PSMD13Q9UNM6 376 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 ASF1AQ9Y294 204 aa9.84□□□□□ -0.83
VPS53-202ENST00000389040 DNAH14Q0VDD8 3507 aa9.83□□□□□ -0.84
VPS53-202ENST00000389040 CPED1A4D0V7 1026 aa9.83□□□□□ -0.84
VPS53-202ENST00000389040 OR52A4PA6NMU1 304 aa9.83□□□□□ -0.84
VPS53-202ENST00000389040 GFYI3L273 518 aa9.83□□□□□ -0.84
VPS53-202ENST00000389040 NTN3O00634 580 aaPredicted RBP9.83□□□□□ -0.84
VPS53-202ENST00000389040 OR7A17O14581 309 aa9.83□□□□□ -0.84
VPS53-202ENST00000389040 ACOT8O14734 319 aa9.83□□□□□ -0.84
VPS53-202ENST00000389040 TOX3O15405 576 aaPredicted RBP9.83□□□□□ -0.84
VPS53-202ENST00000389040 OR4F21O95013 312 aa9.83□□□□□ -0.84
VPS53-202ENST00000389040 GUCA1CO95843 209 aa9.83□□□□□ -0.84
VPS53-202ENST00000389040 C8GP07360 202 aa9.83□□□□□ -0.84
VPS53-202ENST00000389040 FTH1P19P0C7X4 201 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms