RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 TMEM145Q8NBT3 493 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 ZNF563Q8TA94 476 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 CLIP3Q96DZ5 547 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 MRPS26Q9BYN8 205 aaKnown RBP13.22□□□□□ -0.29
LDLR-201ENST00000252444 AKTIPQ9H8T0 292 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 KCNK6Q9Y257 313 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 CXCR6O00574 342 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 FGF3P11487 239 aaPredicted RBP13.22□□□□□ -0.29
LDLR-201ENST00000252444 RNH1P13489 461 aaKnown RBP13.22□□□□□ -0.29
LDLR-201ENST00000252444 CCKBRP32239 447 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 RGS8P57771 180 aaPredicted RBP13.22□□□□□ -0.29
LDLR-201ENST00000252444 CDK3Q00526 305 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 YOD1Q5VVQ6 348 aaPredicted RBP13.22□□□□□ -0.29
LDLR-201ENST00000252444 C16orf87Q6PH81 154 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 C11orf88Q6PI97 169 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 RFKQ969G6 155 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 DACT3Q96B18 629 aaPredicted RBP13.22□□□□□ -0.29
LDLR-201ENST00000252444 TCEAL4Q96EI5 215 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 PRRX2Q99811 253 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 KCNN2Q9H2S1 579 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 ZBTB26Q9HCK0 441 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 DNAJB9Q9UBS3 223 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 TMEM98Q9Y2Y6 226 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 PDE5AO76074 875 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 ATXN1LP0C7T5 689 aaKnown RBP13.22□□□□□ -0.29
LDLR-201ENST00000252444 DECR1Q16698 335 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 UAP1L1Q3KQV9 507 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 BROXQ5VW32 411 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 UTP15Q8TED0 518 aaKnown RBP13.22□□□□□ -0.29
LDLR-201ENST00000252444 YTHDF1Q9BYJ9 559 aaKnown RBP13.22□□□□□ -0.29
LDLR-201ENST00000252444 ZDHHC5Q9C0B5 715 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 HOXD1Q9GZZ0 328 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 LINC00597Q9H2U6 94 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 PCDHGB1Q9Y5G3 927 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 GMPPBQ9Y5P6 360 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 A0A0J9YY10 115 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 FAM170BA6NMN3 283 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 TRIM3O75382 744 aaPredicted RBP13.22□□□□□ -0.29
LDLR-201ENST00000252444 IMPDH2P12268 514 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 SERTAD2Q14140 314 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 ARHGAP40Q5TG30 622 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 PSAPL1Q6NUJ1 521 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 SCIMPQ6UWF3 145 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 IGDCC3Q8IVU1 814 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 ZNF483Q8TF39 744 aaPredicted RBP13.22□□□□□ -0.29
LDLR-201ENST00000252444 RORBQ92753 470 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 TRPV4Q9HBA0 871 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 HRASLS2Q9NWW9 162 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 OSER1Q9NX31 292 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 GSTK1Q9Y2Q3 226 aa13.22□□□□□ -0.29
LDLR-201ENST00000252444 G3V2T6 193 aa13.21□□□□□ -0.29
LDLR-201ENST00000252444 LRATO95237 230 aa13.21□□□□□ -0.29
LDLR-201ENST00000252444 PRLP01236 227 aa13.21□□□□□ -0.29
LDLR-201ENST00000252444 ALAS2P22557 587 aa13.21□□□□□ -0.29
LDLR-201ENST00000252444 POU1F1P28069 291 aa13.21□□□□□ -0.29
LDLR-201ENST00000252444 HLA-FP30511 346 aa13.21□□□□□ -0.29
LDLR-201ENST00000252444 DPTQ07507 201 aa13.21□□□□□ -0.29
LDLR-201ENST00000252444 DCST1Q5T197 706 aa13.21□□□□□ -0.29
LDLR-201ENST00000252444 ZSWIM9Q86XI8 627 aa13.21□□□□□ -0.29
LDLR-201ENST00000252444 CHST14Q8NCH0 376 aa13.21□□□□□ -0.29
LDLR-201ENST00000252444 SERINC2Q96SA4 455 aa13.21□□□□□ -0.29
LDLR-201ENST00000252444 REXO4Q9GZR2 422 aaKnown RBP13.21□□□□□ -0.29
LDLR-201ENST00000252444 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.21□□□□□ -0.29
LDLR-201ENST00000252444 MMP17Q9ULZ9 603 aa13.21□□□□□ -0.29
LDLR-201ENST00000252444 CLCA3PQ9Y6N3 262 aa13.21□□□□□ -0.29
LDLR-201ENST00000252444 SLC16A1P53985 500 aa13.21□□□□□ -0.29
LDLR-201ENST00000252444 SNAP47Q5SQN1 464 aa13.21□□□□□ -0.29
LDLR-201ENST00000252444 ARMC8Q8IUR7 673 aa13.21□□□□□ -0.29
LDLR-201ENST00000252444 C1orf52Q8N6N3 182 aaKnown RBP13.21□□□□□ -0.29
LDLR-201ENST00000252444 PDPRQ8NCN5 879 aa13.21□□□□□ -0.29
LDLR-201ENST00000252444 OR5K1Q8NHB7 308 aa13.21□□□□□ -0.29
LDLR-201ENST00000252444 IL26Q9NPH9 171 aa13.21□□□□□ -0.29
LDLR-201ENST00000252444 ATP6AP2A0A1C7CYW4 349 aa13.21□□□□□ -0.29
LDLR-201ENST00000252444 NPIPB15A6NHN6 443 aaPredicted RBP13.21□□□□□ -0.29
LDLR-201ENST00000252444 PLK4O00444 970 aa13.21□□□□□ -0.29
LDLR-201ENST00000252444 ATP6AP2O75787 350 aa13.21□□□□□ -0.29
LDLR-201ENST00000252444 ALDOAP04075 364 aaKnown RBP13.21□□□□□ -0.29
LDLR-201ENST00000252444 FAM174BQ3ZCQ3 159 aa13.21□□□□□ -0.29
LDLR-201ENST00000252444 MANEAQ5SRI9 462 aa13.21□□□□□ -0.29
LDLR-201ENST00000252444 OR4K14Q8NGD5 310 aa13.21□□□□□ -0.29
LDLR-201ENST00000252444 OR5L2Q8NGL0 311 aa13.21□□□□□ -0.29
LDLR-201ENST00000252444 ATXN10Q9UBB4 475 aa13.21□□□□□ -0.29
LDLR-201ENST00000252444 IKZF3Q9UKT9 509 aa13.21□□□□□ -0.29
LDLR-201ENST00000252444 POLR1DQ9Y2S0 133 aa13.21□□□□□ -0.29
LDLR-201ENST00000252444 CLPTM1O96005 669 aa13.21□□□□□ -0.3
LDLR-201ENST00000252444 FAM91A1Q658Y4 838 aa13.21□□□□□ -0.3
LDLR-201ENST00000252444 SFRP1Q8N474 314 aa13.21□□□□□ -0.3
LDLR-201ENST00000252444 PIH1D2Q8WWB5 315 aa13.21□□□□□ -0.3
LDLR-201ENST00000252444 KLHL6Q8WZ60 621 aa13.21□□□□□ -0.3
LDLR-201ENST00000252444 LENG8Q96PV6 779 aaPredicted RBP13.21□□□□□ -0.3
LDLR-201ENST00000252444 CGREF1Q99674 301 aa13.21□□□□□ -0.3
LDLR-201ENST00000252444 NTMT1Q9BV86 223 aa13.21□□□□□ -0.3
LDLR-201ENST00000252444 TRNAU1APQ9NX07 287 aaKnown RBP13.21□□□□□ -0.3
LDLR-201ENST00000252444 PLCL2Q9UPR0 1127 aa13.21□□□□□ -0.3
LDLR-201ENST00000252444 A0A0G2JMZ2 1700 aa13.21□□□□□ -0.3
LDLR-201ENST00000252444 CCNB2O95067 398 aa13.2□□□□□ -0.3
LDLR-201ENST00000252444 MATN4O95460 622 aa13.2□□□□□ -0.3
LDLR-201ENST00000252444 OLFM2O95897 454 aa13.2□□□□□ -0.3
LDLR-201ENST00000252444 ECHS1P30084 290 aa13.2□□□□□ -0.3
LDLR-201ENST00000252444 FAAH2Q6GMR7 532 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms