RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 KMOO15229 486 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 HLA-DPB1P04440 258 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 SLC2A2P11168 524 aaPredicted RBP13.19□□□□□ -0.3
SF3A1-201ENST00000215793 FSHRP23945 695 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 RPL19P84098 196 aaKnown RBP13.19□□□□□ -0.3
SF3A1-201ENST00000215793 CSTF1Q05048 431 aaKnown RBP13.19□□□□□ -0.3
SF3A1-201ENST00000215793 UBXN2BQ14CS0 331 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 SMYD5Q6GMV2 418 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 CEACAM20Q6UY09 585 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 UBE2J2Q8N2K1 259 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 KCNC2Q96PR1 638 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 TBX5Q99593 518 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 CCDC85CA6NKD9 419 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 PRAMEF11O60813 436 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 ENTPD6O75354 484 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 PSKH1P11801 424 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 ARFRP1Q13795 201 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 TUBA3EQ6PEY2 450 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 TMCO2Q7Z6W1 182 aaPredicted RBP13.19□□□□□ -0.3
SF3A1-201ENST00000215793 IFNL1Q8IU54 200 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 CLDN19Q8N6F1 224 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 ZNF548Q8NEK5 533 aaPredicted RBP13.19□□□□□ -0.3
SF3A1-201ENST00000215793 ZNF461Q8TAF7 563 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 CEP76Q8TAP6 659 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 TSPEARQ8WU66 669 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 SLC25A36Q96CQ1 311 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 ZNF641Q96N77 438 aaPredicted RBP13.19□□□□□ -0.3
SF3A1-201ENST00000215793 SMOQ99835 787 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 TRIM36Q9NQ86 728 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 CREG1O75629 220 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 RAB36O95755 333 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 ACRP10323 421 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 ITIH1P19827 911 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 RBM34P42696 430 aaKnown RBP13.19□□□□□ -0.3
SF3A1-201ENST00000215793 FPGSQ05932 587 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 MS4A13Q5J8X5 152 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 PLCZ1Q86YW0 608 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 NPAS3Q8IXF0 933 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 PROKR2Q8NFJ6 384 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 EZH1Q92800 747 aaPredicted RBP13.19□□□□□ -0.3
SF3A1-201ENST00000215793 ALKBH4Q9NXW9 302 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 STYXL1Q9Y6J8 313 aa13.19□□□□□ -0.3
SF3A1-201ENST00000215793 C9J4A7 227 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 BCAS2O75934 225 aaPredicted RBP13.18□□□□□ -0.3
SF3A1-201ENST00000215793 GDI1P31150 447 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 UFM1P61960 85 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 KCNC3Q14003 757 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 PDCD4Q53EL6 469 aaKnown RBP13.18□□□□□ -0.3
SF3A1-201ENST00000215793 PPP2R2DQ66LE6 453 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 ZNF776Q68DI1 518 aaPredicted RBP13.18□□□□□ -0.3
SF3A1-201ENST00000215793 C22orf39Q6P5X5 142 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 MARCH9Q86YJ5 346 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 RELL1Q8IUW5 271 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 CMTM8Q8IZV2 173 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 SMPDL3BQ92485 455 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 MND1Q9BWT6 205 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 LOC100130705A0A1B0GUX0 176 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 TTC24A2A3L6 582 aaPredicted RBP13.18□□□□□ -0.3
SF3A1-201ENST00000215793 F2P00734 622 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 TNFP01375 233 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 FESP07332 822 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 G6PDP11413 515 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 OR2B6P58173 313 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 DNAJB13P59910 316 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 NADK2Q4G0N4 442 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 MSS51Q4VC12 460 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 LRRC66Q68CR7 880 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 GLIS1Q8NBF1 620 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 SLC5A11Q8WWX8 675 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 ARMC5Q96C12 935 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 GAL3ST1Q99999 423 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 FAM170BA6NMN3 283 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 CAPN14A8MX76 684 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 CLPXO76031 633 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 CLUP10909 449 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 HAPLN1P10915 354 aaPredicted RBP13.18□□□□□ -0.3
SF3A1-201ENST00000215793 AGXTP21549 392 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 TCEA1P23193 301 aaKnown RBP13.18□□□□□ -0.3
SF3A1-201ENST00000215793 BMP8BP34820 402 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 ADAM17P78536 824 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 PON3Q15166 354 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 AMZ1Q400G9 498 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 SLC29A4Q7RTT9 530 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 BMP8AQ7Z5Y6 402 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 OSTM1Q86WC4 334 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 DCUN1D3Q8IWE4 304 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 PLA2G15Q8NCC3 412 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 CCDC115Q96NT0 180 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 NDC1Q9BTX1 674 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 SDHAF3Q9NRP4 125 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 RBMX2Q9Y388 322 aaKnown RBP13.18□□□□□ -0.3
SF3A1-201ENST00000215793 SCDO00767 359 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 PRH1P02810 166 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 APLP1P51693 650 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 TGFBIQ15582 683 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 C2CD4AQ8NCU7 369 aaPredicted RBP13.18□□□□□ -0.3
SF3A1-201ENST00000215793 BPIFB1Q8TDL5 484 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 HMGB4Q8WW32 186 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 SCGB3A2Q96PL1 93 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 PNO1Q9NRX1 252 aaKnown RBP13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms