RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 ARL15Q9NXU5 204 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 CRNNQ9UBG3 495 aaPredicted RBP3.87□□□□□ -1.79
SCN1A-214ENST00000637038 ZMIZ1Q9ULJ6 1067 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 FAM32AQ9Y421 112 aaKnown RBP3.87□□□□□ -1.79
SCN1A-214ENST00000637038 PCDHB7Q9Y5E2 793 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 CACNA1AO00555 2505 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 A0A1W2PQ67 120 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 J3QRK9 145 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 QSOX1O00391 747 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 KHNYNO15037 678 aaKnown RBP3.87□□□□□ -1.79
SCN1A-214ENST00000637038 LSM1O15116 133 aaKnown RBP3.87□□□□□ -1.79
SCN1A-214ENST00000637038 ADAMDEC1O15204 470 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 INPPL1O15357 1258 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 MAGEB3O15480 346 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 DFNA5O60443 496 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 ADAMTS4O75173 837 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 BCAS1O75363 584 aaPredicted RBP3.87□□□□□ -1.79
SCN1A-214ENST00000637038 B3GALNT1O75752 331 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 GABARAPO95166 117 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 SLC25A14O95258 325 aaPredicted RBP3.87□□□□□ -1.79
SCN1A-214ENST00000637038 LATS1O95835 1130 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 DLGAP3O95886 979 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 UGT2B4P06133 528 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 ACPPP15309 386 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 CD53P19397 219 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 PRPS1L1P21108 318 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 SERPINA4P29622 427 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 CD40LGP29965 261 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 SHMT2P34897 504 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 HNF1BP35680 557 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 SPAM1P38567 509 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 DCTP40126 519 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 NRIP1P48552 1158 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 NOVA1P51513 510 aaKnown RBP3.87□□□□□ -1.79
SCN1A-214ENST00000637038 DGKQP52824 942 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 CLDN8P56748 225 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 SP140Q13342 867 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 DSC3Q14574 896 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 TEAD4Q15561 434 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 RUNDC3AQ59EK9 446 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 PERM1Q5SV97 790 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 KIAA1614Q5VZ46 1190 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 DLEU7Q6UYE1 221 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 IGFN1Q86VF2 1251 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 CIR1Q86X95 450 aaPredicted RBP3.87□□□□□ -1.79
SCN1A-214ENST00000637038 YAF2Q8IY57 180 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 PGBD5Q8N414 524 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 FAM110BQ8TC76 370 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 SLC22A17Q8WUG5 538 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 FBXL8Q96CD0 374 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 REPS1Q96D71 796 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 SH3YL1Q96HL8 342 aaPredicted RBP3.87□□□□□ -1.79
SCN1A-214ENST00000637038 ZNF558Q96NG5 402 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 MROQ9BYG7 248 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 GABARAPL1Q9H0R8 117 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 MMP27Q9H306 513 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 ATP13A3Q9H7F0 1226 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 CPNE5Q9HCH3 593 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 ZFP14Q9HCL3 533 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 SLC2A4RGQ9NR83 387 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 FAM120CQ9NX05 1096 aaKnown RBP3.87□□□□□ -1.79
SCN1A-214ENST00000637038 FAM8A1Q9UBU6 413 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 TSR3Q9UJK0 312 aaKnown RBP3.87□□□□□ -1.79
SCN1A-214ENST00000637038 BOLA1Q9Y3E2 137 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 PEX16Q9Y5Y5 336 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 DGKBQ9Y6T7 804 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 PLXNA2O75051 1894 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 GLYATL1P3A0A0U1RQE8 302 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 SLC38A8A6NNN8 435 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 MEIS3P2A8K0S8 358 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 E9PQ18 207 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 LOC110117498-PIK3R3F6TDL0 507 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 PPP6CO00743 305 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 FFAR3O14843 346 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 GPR42O15529 346 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 NOBOXO60393 691 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 MPZL2O60487 215 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 SULT1C4O75897 302 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 PRAMEF1O95521 474 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 IGLV3-27P01718 113 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 FTH1P02794 183 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 COX7A2P14406 83 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 MATN1P21941 496 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 HALP42357 657 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 MLLT3P42568 568 aaPredicted RBP3.87□□□□□ -1.79
SCN1A-214ENST00000637038 GPR17Q13304 367 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 PON2Q15165 354 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 DUOXA1Q1HG43 343 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 ZNF181Q2M3W8 571 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 PAGE2BQ5JRK9 111 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 SPANXN4Q5MJ08 99 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 SPANXN2Q5MJ10 180 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 LETMD1Q6P1Q0 360 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 NEK5Q6P3R8 708 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 USP45Q70EL2 814 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 PRSS48Q7RTY5 328 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 AKAP14Q86UN6 197 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 TSPYL5Q86VY4 417 aaPredicted RBP3.87□□□□□ -1.79
SCN1A-214ENST00000637038 ARMC8Q8IUR7 673 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 ZNF683Q8IZ20 524 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms