RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 ANKRD53Q8N9V6 530 aa19.34■□□□□ 0.69
CLN3-250ENST00000636839 ABHD11Q8NFV4 315 aa19.34■□□□□ 0.69
CLN3-250ENST00000636839 OR2L3Q8NG85 312 aa19.34■□□□□ 0.69
CLN3-250ENST00000636839 KLHL29Q96CT2 875 aa19.34■□□□□ 0.69
CLN3-250ENST00000636839 PPM1MQ96MI6 270 aa19.34■□□□□ 0.69
CLN3-250ENST00000636839 EFCAB11Q9BUY7 163 aa19.34■□□□□ 0.69
CLN3-250ENST00000636839 TBC1D10AQ9BXI6 508 aa19.34■□□□□ 0.69
CLN3-250ENST00000636839 PCBD2Q9H0N5 130 aa19.34■□□□□ 0.69
CLN3-250ENST00000636839 SDR39U1Q9NRG7 319 aaPredicted RBP19.34■□□□□ 0.69
CLN3-250ENST00000636839 TAS2R1Q9NYW7 299 aa19.34■□□□□ 0.69
CLN3-250ENST00000636839 OR6C2Q9NZP2 312 aa19.34■□□□□ 0.69
CLN3-250ENST00000636839 SPASTQ9UBP0 616 aa19.34■□□□□ 0.69
CLN3-250ENST00000636839 DOLKQ9UPQ8 538 aa19.34■□□□□ 0.69
CLN3-250ENST00000636839 DLGAP4Q9Y2H0 992 aa19.34■□□□□ 0.69
CLN3-250ENST00000636839 SNRNP200O75643 2136 aaKnown RBP19.33■□□□□ 0.69
CLN3-250ENST00000636839 WDR87Q6ZQQ6 2873 aa19.33■□□□□ 0.69
CLN3-250ENST00000636839 KIR2DS5A0A0G2JLQ3 304 aa19.33■□□□□ 0.68
CLN3-250ENST00000636839 A0A0G2JNG1 304 aa19.33■□□□□ 0.68
CLN3-250ENST00000636839 KIR2DS3K7RE56 304 aa19.33■□□□□ 0.68
CLN3-250ENST00000636839 SAP18O00422 153 aaKnown RBP19.33■□□□□ 0.68
CLN3-250ENST00000636839 LCMT2O60294 686 aaKnown RBP19.33■□□□□ 0.68
CLN3-250ENST00000636839 PIAS2O75928 621 aa19.33■□□□□ 0.68
CLN3-250ENST00000636839 EZRP15311 586 aaKnown RBP19.33■□□□□ 0.68
CLN3-250ENST00000636839 CSNK1G2P78368 415 aa19.33■□□□□ 0.68
CLN3-250ENST00000636839 HHEXQ03014 270 aa19.33■□□□□ 0.68
CLN3-250ENST00000636839 KIR2DS5Q14953 304 aa19.33■□□□□ 0.68
CLN3-250ENST00000636839 ADCK2Q7Z695 626 aa19.33■□□□□ 0.68
CLN3-250ENST00000636839 LAS2Q8IYD9 372 aa19.33■□□□□ 0.68
CLN3-250ENST00000636839 RBM15BQ8NDT2 890 aaKnown RBP19.33■□□□□ 0.68
CLN3-250ENST00000636839 FLVCR1-AS1Q8TAF5 88 aa19.33■□□□□ 0.68
CLN3-250ENST00000636839 PPP3R2Q96LZ3 170 aa19.33■□□□□ 0.68
CLN3-250ENST00000636839 MRPL1Q9BYD6 325 aaKnown RBP19.33■□□□□ 0.68
CLN3-250ENST00000636839 SYNPO2LQ9H987 977 aa19.33■□□□□ 0.68
CLN3-250ENST00000636839 POT1Q9NUX5 634 aa19.33■□□□□ 0.68
CLN3-250ENST00000636839 C1orf109Q9NX04 203 aa19.33■□□□□ 0.68
CLN3-250ENST00000636839 PPM1DO15297 605 aa19.32■□□□□ 0.68
CLN3-250ENST00000636839 RSL1D1O76021 490 aaKnown RBP19.32■□□□□ 0.68
CLN3-250ENST00000636839 TGFB1P01137 390 aa19.32■□□□□ 0.68
CLN3-250ENST00000636839 STATHP02808 62 aa19.32■□□□□ 0.68
CLN3-250ENST00000636839 CCR8P51685 355 aa19.32■□□□□ 0.68
CLN3-250ENST00000636839 HNRNPKP61978 463 aaKnown RBP eCLIP19.32■□□□□ 0.68
CLN3-250ENST00000636839 CYP4F2P78329 520 aa19.32■□□□□ 0.68
CLN3-250ENST00000636839 PTGR1Q14914 329 aa19.32■□□□□ 0.68
CLN3-250ENST00000636839 RPS6KA2Q15349 733 aa19.32■□□□□ 0.68
CLN3-250ENST00000636839 SHBQ15464 509 aa19.32■□□□□ 0.68
CLN3-250ENST00000636839 LPAL2Q16609 132 aa19.32■□□□□ 0.68
CLN3-250ENST00000636839 TMIGD1Q6UXZ0 262 aa19.32■□□□□ 0.68
CLN3-250ENST00000636839 ZNF438Q7Z4V0 828 aa19.32■□□□□ 0.68
CLN3-250ENST00000636839 GKN2Q86XP6 184 aa19.32■□□□□ 0.68
CLN3-250ENST00000636839 MIER2Q8N344 545 aa19.32■□□□□ 0.68
CLN3-250ENST00000636839 SLC25A45Q8N413 288 aa19.32■□□□□ 0.68
CLN3-250ENST00000636839 CMTM5Q96DZ9 223 aa19.32■□□□□ 0.68
CLN3-250ENST00000636839 MAGEB10Q96LZ2 347 aaPredicted RBP19.32■□□□□ 0.68
CLN3-250ENST00000636839 ACTL8Q9H568 366 aa19.32■□□□□ 0.68
CLN3-250ENST00000636839 MRPS30Q9NP92 439 aaKnown RBP19.32■□□□□ 0.68
CLN3-250ENST00000636839 GOLGA4Q13439 2230 aaKnown RBP19.32■□□□□ 0.68
CLN3-250ENST00000636839 A0A1B0GTW7 788 aa19.32■□□□□ 0.68
CLN3-250ENST00000636839 NOBOXO60393 691 aa19.32■□□□□ 0.68
CLN3-250ENST00000636839 IDO1P14902 403 aa19.32■□□□□ 0.68
CLN3-250ENST00000636839 IL12AP29459 219 aa19.32■□□□□ 0.68
CLN3-250ENST00000636839 CTSKP43235 329 aa19.32■□□□□ 0.68
CLN3-250ENST00000636839 PPP1CAP62136 330 aa19.32■□□□□ 0.68
CLN3-250ENST00000636839 SLC25A3Q00325 362 aa19.32■□□□□ 0.68
CLN3-250ENST00000636839 CYLC2Q14093 348 aaPredicted RBP19.32■□□□□ 0.68
CLN3-250ENST00000636839 PAGE2BQ5JRK9 111 aa19.32■□□□□ 0.68
CLN3-250ENST00000636839 ZFAND4Q86XD8 727 aa19.32■□□□□ 0.68
CLN3-250ENST00000636839 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP19.32■□□□□ 0.68
CLN3-250ENST00000636839 ARL14Q8N4G2 192 aa19.32■□□□□ 0.68
CLN3-250ENST00000636839 OR4K1Q8NGD4 311 aa19.32■□□□□ 0.68
CLN3-250ENST00000636839 CLHC1Q8NHS4 586 aa19.32■□□□□ 0.68
CLN3-250ENST00000636839 APOLD1Q96LR9 279 aa19.32■□□□□ 0.68
CLN3-250ENST00000636839 DPH7Q9BTV6 452 aa19.32■□□□□ 0.68
CLN3-250ENST00000636839 EBPLQ9BY08 206 aa19.32■□□□□ 0.68
CLN3-250ENST00000636839 KLHL25Q9H0H3 589 aa19.32■□□□□ 0.68
CLN3-250ENST00000636839 OR51B5Q9H339 312 aa19.32■□□□□ 0.68
CLN3-250ENST00000636839 FAM86C2PA6NEL3 165 aa19.31■□□□□ 0.68
CLN3-250ENST00000636839 OR5K4A6NMS3 321 aa19.31■□□□□ 0.68
CLN3-250ENST00000636839 ATP5HO75947 161 aa19.31■□□□□ 0.68
CLN3-250ENST00000636839 TBX6O95947 436 aaPredicted RBP19.31■□□□□ 0.68
CLN3-250ENST00000636839 MYF5P13349 255 aa19.31■□□□□ 0.68
CLN3-250ENST00000636839 TYRP1P17643 537 aa19.31■□□□□ 0.68
CLN3-250ENST00000636839 TACR1P25103 407 aa19.31■□□□□ 0.68
CLN3-250ENST00000636839 ZFP36L2P47974 494 aaKnown RBP19.31■□□□□ 0.68
CLN3-250ENST00000636839 ATP4BP51164 291 aa19.31■□□□□ 0.68
CLN3-250ENST00000636839 STX1BP61266 288 aa19.31■□□□□ 0.68
CLN3-250ENST00000636839 GSTA3Q16772 222 aa19.31■□□□□ 0.68
CLN3-250ENST00000636839 CYP20A1Q6UW02 462 aa19.31■□□□□ 0.68
CLN3-250ENST00000636839 TMEM26Q6ZUK4 368 aa19.31■□□□□ 0.68
CLN3-250ENST00000636839 CEP68Q76N32 757 aa19.31■□□□□ 0.68
CLN3-250ENST00000636839 LIX1Q8N485 282 aa19.31■□□□□ 0.68
CLN3-250ENST00000636839 GPR156Q8NFN8 814 aa19.31■□□□□ 0.68
CLN3-250ENST00000636839 OR2A14Q96R47 310 aa19.31■□□□□ 0.68
CLN3-250ENST00000636839 NPAS2Q99743 824 aa19.31■□□□□ 0.68
CLN3-250ENST00000636839 TUBB6Q9BUF5 446 aa19.31■□□□□ 0.68
CLN3-250ENST00000636839 BRINP2Q9C0B6 783 aa19.31■□□□□ 0.68
CLN3-250ENST00000636839 LRMDAQ9H2I8 198 aa19.31■□□□□ 0.68
CLN3-250ENST00000636839 ACTR5Q9H9F9 607 aaPredicted RBP19.31■□□□□ 0.68
CLN3-250ENST00000636839 PELI2Q9HAT8 420 aa19.31■□□□□ 0.68
CLN3-250ENST00000636839 VPS29Q9UBQ0 182 aa19.31■□□□□ 0.68
CLN3-250ENST00000636839 HEATR5BQ9P2D3 2071 aa19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms