RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 PCBP2Q15366 365 aaKnown RBP eCLIP18.54■□□□□ 0.56
UPF1-209ENST00000600310 METTL2BQ6P1Q9 378 aaKnown RBP18.54■□□□□ 0.56
UPF1-209ENST00000600310 SRRM1Q8IYB3 904 aaKnown RBP18.54■□□□□ 0.56
UPF1-209ENST00000600310 PTGR2Q8N8N7 351 aaPredicted RBP18.54■□□□□ 0.56
UPF1-209ENST00000600310 OR4K1Q8NGD4 311 aa18.54■□□□□ 0.56
UPF1-209ENST00000600310 N4BP2L2Q92802 583 aaPredicted RBP18.54■□□□□ 0.56
UPF1-209ENST00000600310 ZNF285Q96NJ3 590 aa18.54■□□□□ 0.56
UPF1-209ENST00000600310 ZFYVE21Q9BQ24 234 aa18.54■□□□□ 0.56
UPF1-209ENST00000600310 SPRY4Q9C004 299 aa18.54■□□□□ 0.56
UPF1-209ENST00000600310 EMCNQ9ULC0 261 aa18.54■□□□□ 0.56
UPF1-209ENST00000600310 TNPO3Q9Y5L0 923 aaKnown RBP18.54■□□□□ 0.56
UPF1-209ENST00000600310 ADAMTS20P59510 1910 aa18.53■□□□□ 0.56
UPF1-209ENST00000600310 A0A0J9YVX5 310 aa18.53■□□□□ 0.56
UPF1-209ENST00000600310 H3BMH7 237 aa18.53■□□□□ 0.56
UPF1-209ENST00000600310 K7EPI3 171 aa18.53■□□□□ 0.56
UPF1-209ENST00000600310 COPEO14579 308 aa18.53■□□□□ 0.56
UPF1-209ENST00000600310 CCNT2O60583 730 aaKnown RBP18.53■□□□□ 0.56
UPF1-209ENST00000600310 TIAF1O95411 115 aa18.53■□□□□ 0.56
UPF1-209ENST00000600310 GNAZP19086 355 aa18.53■□□□□ 0.56
UPF1-209ENST00000600310 ITGA1P56199 1179 aa18.53■□□□□ 0.56
UPF1-209ENST00000600310 PCM1Q15154 2024 aa18.53■□□□□ 0.56
UPF1-209ENST00000600310 PDK4Q16654 411 aa18.53■□□□□ 0.56
UPF1-209ENST00000600310 TNFAIP8L3Q5GJ75 292 aa18.53■□□□□ 0.56
UPF1-209ENST00000600310 CATSPEREQ5SY80 951 aa18.53■□□□□ 0.56
UPF1-209ENST00000600310 PWWP2BQ6NUJ5 590 aa18.53■□□□□ 0.56
UPF1-209ENST00000600310 NXPE4Q6UWF7 544 aa18.53■□□□□ 0.56
UPF1-209ENST00000600310 BANPQ8N9N5 519 aa18.53■□□□□ 0.56
UPF1-209ENST00000600310 FGF11Q92914 225 aa18.53■□□□□ 0.56
UPF1-209ENST00000600310 PELI2Q9HAT8 420 aa18.53■□□□□ 0.56
UPF1-209ENST00000600310 ENAMQ9NRM1 1142 aa18.53■□□□□ 0.56
UPF1-209ENST00000600310 SENP1Q9P0U3 644 aa18.53■□□□□ 0.56
UPF1-209ENST00000600310 OPTCQ9UBM4 332 aa18.53■□□□□ 0.56
UPF1-209ENST00000600310 SNRNP200O75643 2136 aaKnown RBP18.53■□□□□ 0.56
UPF1-209ENST00000600310 ZFHX4Q86UP3 3567 aa18.52■□□□□ 0.56
UPF1-209ENST00000600310 IQCJ-SCHIP1C9J366 451 aaPredicted RBP18.52■□□□□ 0.56
UPF1-209ENST00000600310 HAT1O14929 419 aa18.52■□□□□ 0.56
UPF1-209ENST00000600310 OR2B3O76000 313 aa18.52■□□□□ 0.56
UPF1-209ENST00000600310 EPORP19235 508 aa18.52■□□□□ 0.56
UPF1-209ENST00000600310 TAC1P20366 129 aa18.52■□□□□ 0.56
UPF1-209ENST00000600310 CCDC153Q494R4 210 aa18.52■□□□□ 0.56
UPF1-209ENST00000600310 SLCO4C1Q6ZQN7 724 aa18.52■□□□□ 0.56
UPF1-209ENST00000600310 TMPRSS11BQ86T26 416 aa18.52■□□□□ 0.56
UPF1-209ENST00000600310 GPR135Q8IZ08 494 aa18.52■□□□□ 0.56
UPF1-209ENST00000600310 SNX31Q8N9S9 440 aa18.52■□□□□ 0.56
UPF1-209ENST00000600310 PHF21BQ96EK2 531 aa18.52■□□□□ 0.56
UPF1-209ENST00000600310 THAP11Q96EK4 314 aa18.52■□□□□ 0.56
UPF1-209ENST00000600310 PGM2Q96G03 612 aa18.52■□□□□ 0.56
UPF1-209ENST00000600310 APOPT1Q96IL0 206 aa18.52■□□□□ 0.56
UPF1-209ENST00000600310 OR2A5Q96R48 311 aa18.52■□□□□ 0.56
UPF1-209ENST00000600310 SELENOSQ9BQE4 189 aa18.52■□□□□ 0.56
UPF1-209ENST00000600310 SARGQ9BW04 601 aa18.52■□□□□ 0.56
UPF1-209ENST00000600310 SPRTNQ9H040 489 aaPredicted RBP18.52■□□□□ 0.56
UPF1-209ENST00000600310 TMEM184BQ9Y519 407 aaPredicted RBP18.52■□□□□ 0.56
UPF1-209ENST00000600310 USP24Q9UPU5 2620 aa18.52■□□□□ 0.55
UPF1-209ENST00000600310 KCNE1BA0A087WTH5 132 aa18.51■□□□□ 0.55
UPF1-209ENST00000600310 LOC105369274A0A096LPK9 316 aa18.51■□□□□ 0.55
UPF1-209ENST00000600310 LOC102723532A0A0G2JNH3 316 aa18.51■□□□□ 0.55
UPF1-209ENST00000600310 A8MT66 165 aa18.51■□□□□ 0.55
UPF1-209ENST00000600310 E7EQ34 232 aa18.51■□□□□ 0.55
UPF1-209ENST00000600310 DLX3O60479 287 aa18.51■□□□□ 0.55
UPF1-209ENST00000600310 PLIN3O60664 434 aa18.51■□□□□ 0.55
UPF1-209ENST00000600310 STK17BO94768 372 aa18.51■□□□□ 0.55
UPF1-209ENST00000600310 SIX3O95343 332 aaPredicted RBP18.51■□□□□ 0.55
UPF1-209ENST00000600310 PROCP04070 461 aa18.51■□□□□ 0.55
UPF1-209ENST00000600310 CTSBP07858 339 aa18.51■□□□□ 0.55
UPF1-209ENST00000600310 C1GALT1C1LP0DN25 315 aa18.51■□□□□ 0.55
UPF1-209ENST00000600310 ZNF28P17035 718 aa18.51■□□□□ 0.55
UPF1-209ENST00000600310 ATP5F1P24539 256 aaPredicted RBP18.51■□□□□ 0.55
UPF1-209ENST00000600310 GRK3P35626 688 aa18.51■□□□□ 0.55
UPF1-209ENST00000600310 RPS15AP62244 130 aaKnown RBP18.51■□□□□ 0.55
UPF1-209ENST00000600310 NFKB2Q00653 900 aa18.51■□□□□ 0.55
UPF1-209ENST00000600310 PCDH1Q08174 1060 aa18.51■□□□□ 0.55
UPF1-209ENST00000600310 TCTE1Q5JU00 501 aa18.51■□□□□ 0.55
UPF1-209ENST00000600310 FRMPD2BQ6IN97 320 aa18.51■□□□□ 0.55
UPF1-209ENST00000600310 TLDC1Q6P9B6 456 aa18.51■□□□□ 0.55
UPF1-209ENST00000600310 TMEM126BQ8IUX1 230 aa18.51■□□□□ 0.55
UPF1-209ENST00000600310 PLD3Q8IV08 490 aa18.51■□□□□ 0.55
UPF1-209ENST00000600310 OR4N4Q8N0Y3 316 aa18.51■□□□□ 0.55
UPF1-209ENST00000600310 SNIP1Q8TAD8 396 aaKnown RBP18.51■□□□□ 0.55
UPF1-209ENST00000600310 SMC6Q96SB8 1091 aa18.51■□□□□ 0.55
UPF1-209ENST00000600310 ULBP3Q9BZM4 244 aa18.51■□□□□ 0.55
UPF1-209ENST00000600310 EHD1Q9H4M9 534 aa18.51■□□□□ 0.55
UPF1-209ENST00000600310 SYNPO2LQ9H987 977 aa18.51■□□□□ 0.55
UPF1-209ENST00000600310 PLLPQ9Y342 182 aa18.51■□□□□ 0.55
UPF1-209ENST00000600310 PCDHB3Q9Y5E6 796 aa18.51■□□□□ 0.55
UPF1-209ENST00000600310 AP1M2Q9Y6Q5 423 aa18.51■□□□□ 0.55
UPF1-209ENST00000600310 CFAP47Q6ZTR5 3102 aa18.5■□□□□ 0.55
UPF1-209ENST00000600310 TRBC2A0A5B9 178 aa18.5■□□□□ 0.55
UPF1-209ENST00000600310 TMEM8BA6NDV4 472 aa18.5■□□□□ 0.55
UPF1-209ENST00000600310 LRRC14BA6NHZ5 514 aa18.5■□□□□ 0.55
UPF1-209ENST00000600310 H0YGG7 62 aa18.5■□□□□ 0.55
UPF1-209ENST00000600310 E2F3O00716 465 aa18.5■□□□□ 0.55
UPF1-209ENST00000600310 CLGNO14967 610 aa18.5■□□□□ 0.55
UPF1-209ENST00000600310 ZSCAN9O15535 394 aaPredicted RBP18.5■□□□□ 0.55
UPF1-209ENST00000600310 TLX3O43711 291 aaPredicted RBP18.5■□□□□ 0.55
UPF1-209ENST00000600310 PRAMEF4O60810 478 aa18.5■□□□□ 0.55
UPF1-209ENST00000600310 SCRG1O75711 98 aa18.5■□□□□ 0.55
UPF1-209ENST00000600310 KIAA0754O94854 1291 aa18.5■□□□□ 0.55
UPF1-209ENST00000600310 DLGAP3O95886 979 aa18.5■□□□□ 0.55
UPF1-209ENST00000600310 EPB42P16452 691 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms