RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 TXLNGQ9NUQ3 528 aa15.42■□□□□ 0.06
TRIM28-213ENST00000598355 TMEM184CQ9NVA4 438 aa15.42■□□□□ 0.06
TRIM28-213ENST00000598355 ARL15Q9NXU5 204 aa15.42■□□□□ 0.06
TRIM28-213ENST00000598355 UTP6Q9NYH9 597 aaKnown RBP15.42■□□□□ 0.06
TRIM28-213ENST00000598355 POLHQ9Y253 713 aa15.42■□□□□ 0.06
TRIM28-213ENST00000598355 OARD1Q9Y530 152 aa15.42■□□□□ 0.06
TRIM28-213ENST00000598355 KCNMB2Q9Y691 235 aa15.42■□□□□ 0.06
TRIM28-213ENST00000598355 C9J4A7 227 aa15.41■□□□□ 0.06
TRIM28-213ENST00000598355 H0YGG7 62 aa15.41■□□□□ 0.06
TRIM28-213ENST00000598355 PHGDHO43175 533 aaKnown RBP15.41■□□□□ 0.06
TRIM28-213ENST00000598355 FAM155BO75949 473 aa15.41■□□□□ 0.06
TRIM28-213ENST00000598355 NPPBP16860 134 aa15.41■□□□□ 0.06
TRIM28-213ENST00000598355 STMN1P16949 149 aa15.41■□□□□ 0.06
TRIM28-213ENST00000598355 SAT1P21673 171 aa15.41■□□□□ 0.06
TRIM28-213ENST00000598355 ARF3P61204 181 aaPredicted RBP15.41■□□□□ 0.06
TRIM28-213ENST00000598355 CSNK1G2P78368 415 aa15.41■□□□□ 0.06
TRIM28-213ENST00000598355 TSTA3Q13630 321 aaPredicted RBP15.41■□□□□ 0.06
TRIM28-213ENST00000598355 LY6DQ14210 128 aa15.41■□□□□ 0.06
TRIM28-213ENST00000598355 ERV3-1Q14264 604 aa15.41■□□□□ 0.06
TRIM28-213ENST00000598355 USP10Q14694 798 aaKnown RBP15.41■□□□□ 0.06
TRIM28-213ENST00000598355 TSNQ15631 228 aaKnown RBP15.41■□□□□ 0.06
TRIM28-213ENST00000598355 C1orf189Q5VU69 101 aa15.41■□□□□ 0.06
TRIM28-213ENST00000598355 CAPN13Q6MZZ7 669 aaPredicted RBP15.41■□□□□ 0.06
TRIM28-213ENST00000598355 C16orf46Q6P387 395 aa15.41■□□□□ 0.06
TRIM28-213ENST00000598355 APLFQ8IW19 511 aaPredicted RBP15.41■□□□□ 0.06
TRIM28-213ENST00000598355 TTC29Q8NA56 475 aaPredicted RBP15.41■□□□□ 0.06
TRIM28-213ENST00000598355 ABHD11Q8NFV4 315 aa15.41■□□□□ 0.06
TRIM28-213ENST00000598355 HAUS8Q9BT25 410 aa15.41■□□□□ 0.06
TRIM28-213ENST00000598355 TRIM54Q9BYV2 358 aa15.41■□□□□ 0.06
TRIM28-213ENST00000598355 SLC26A1Q9H2B4 701 aa15.41■□□□□ 0.06
TRIM28-213ENST00000598355 L2HGDHQ9H9P8 463 aa15.41■□□□□ 0.06
TRIM28-213ENST00000598355 GEMIN8Q9NWZ8 242 aaKnown RBP15.41■□□□□ 0.06
TRIM28-213ENST00000598355 FASNP49327 2511 aaKnown RBP15.41■□□□□ 0.06
TRIM28-213ENST00000598355 DOCK10Q96BY6 2186 aa15.41■□□□□ 0.06
TRIM28-213ENST00000598355 KCNE1BA0A087WTH5 132 aa15.4■□□□□ 0.06
TRIM28-213ENST00000598355 HMX2A2RU54 273 aa15.4■□□□□ 0.06
TRIM28-213ENST00000598355 FAM87AP0C7U9 286 aa15.4■□□□□ 0.06
TRIM28-213ENST00000598355 SLC35E2BP0CK96 405 aa15.4■□□□□ 0.06
TRIM28-213ENST00000598355 SLC12A2P55011 1212 aa15.4■□□□□ 0.06
TRIM28-213ENST00000598355 POLE2P56282 527 aa15.4■□□□□ 0.06
TRIM28-213ENST00000598355 RAB10P61026 200 aa15.4■□□□□ 0.06
TRIM28-213ENST00000598355 FAM214AQ32MH5 1076 aa15.4■□□□□ 0.06
TRIM28-213ENST00000598355 THEMIS2Q5TEJ8 643 aa15.4■□□□□ 0.06
TRIM28-213ENST00000598355 TTLL10Q6ZVT0 673 aa15.4■□□□□ 0.06
TRIM28-213ENST00000598355 VN1R4Q7Z5H5 301 aa15.4■□□□□ 0.06
TRIM28-213ENST00000598355 C17orf64Q86WR6 236 aa15.4■□□□□ 0.06
TRIM28-213ENST00000598355 OR4K1Q8NGD4 311 aa15.4■□□□□ 0.06
TRIM28-213ENST00000598355 APOBEC4Q8WW27 367 aaKnown RBP15.4■□□□□ 0.06
TRIM28-213ENST00000598355 THAP4Q8WY91 577 aa15.4■□□□□ 0.06
TRIM28-213ENST00000598355 MVB12AQ96EY5 273 aa15.4■□□□□ 0.06
TRIM28-213ENST00000598355 STARD5Q9NSY2 213 aa15.4■□□□□ 0.06
TRIM28-213ENST00000598355 IRAK4Q9NWZ3 460 aa15.4■□□□□ 0.06
TRIM28-213ENST00000598355 PADI2Q9Y2J8 665 aa15.4■□□□□ 0.06
TRIM28-213ENST00000598355 ZNF462Q96JM2 2506 aa15.4■□□□□ 0.06
TRIM28-213ENST00000598355 HYKKA2RU49 373 aa15.39■□□□□ 0.05
TRIM28-213ENST00000598355 CDC14CA4D256 554 aa15.39■□□□□ 0.05
TRIM28-213ENST00000598355 H7BY64 318 aa15.39■□□□□ 0.05
TRIM28-213ENST00000598355 P2RX6O15547 441 aa15.39■□□□□ 0.05
TRIM28-213ENST00000598355 ALBP02768 609 aa15.39■□□□□ 0.05
TRIM28-213ENST00000598355 PRB1P04280 392 aa15.39■□□□□ 0.05
TRIM28-213ENST00000598355 CD63P08962 238 aa15.39■□□□□ 0.05
TRIM28-213ENST00000598355 CD1DP15813 335 aa15.39■□□□□ 0.05
TRIM28-213ENST00000598355 PHBP35232 272 aa15.39■□□□□ 0.05
TRIM28-213ENST00000598355 CCR10P46092 362 aa15.39■□□□□ 0.05
TRIM28-213ENST00000598355 SLC6A12P48065 614 aa15.39■□□□□ 0.05
TRIM28-213ENST00000598355 HNMTP50135 292 aa15.39■□□□□ 0.05
TRIM28-213ENST00000598355 PMS2P54278 862 aa15.39■□□□□ 0.05
TRIM28-213ENST00000598355 ATP6V0D1P61421 351 aa15.39■□□□□ 0.05
TRIM28-213ENST00000598355 RPS15AP62244 130 aaKnown RBP15.39■□□□□ 0.05
TRIM28-213ENST00000598355 TGFBIQ15582 683 aa15.39■□□□□ 0.05
TRIM28-213ENST00000598355 MUM1Q2TAK8 710 aa15.39■□□□□ 0.05
TRIM28-213ENST00000598355 DEFB109BQ30KR1 87 aa15.39■□□□□ 0.05
TRIM28-213ENST00000598355 CDKL4Q5MAI5 379 aa15.39■□□□□ 0.05
TRIM28-213ENST00000598355 FAM69BQ5VUD6 431 aa15.39■□□□□ 0.05
TRIM28-213ENST00000598355 GARNL3Q5VVW2 1013 aa15.39■□□□□ 0.05
TRIM28-213ENST00000598355 PRMT9Q6P2P2 845 aa15.39■□□□□ 0.05
TRIM28-213ENST00000598355 ZNF843Q8N446 348 aa15.39■□□□□ 0.05
TRIM28-213ENST00000598355 CSNK1A1LQ8N752 337 aa15.39■□□□□ 0.05
TRIM28-213ENST00000598355 OR2Y1Q8NGV0 311 aa15.39■□□□□ 0.05
TRIM28-213ENST00000598355 PTERQ96BW5 349 aa15.39■□□□□ 0.05
TRIM28-213ENST00000598355 PYCR2Q96C36 320 aa15.39■□□□□ 0.05
TRIM28-213ENST00000598355 RHBDF1Q96CC6 855 aa15.39■□□□□ 0.05
TRIM28-213ENST00000598355 THAP11Q96EK4 314 aa15.39■□□□□ 0.05
TRIM28-213ENST00000598355 PRAP1Q96NZ9 151 aa15.39■□□□□ 0.05
TRIM28-213ENST00000598355 CYTH2Q99418 400 aa15.39■□□□□ 0.05
TRIM28-213ENST00000598355 SPSB2Q99619 263 aa15.39■□□□□ 0.05
TRIM28-213ENST00000598355 WDR54Q9H977 334 aa15.39■□□□□ 0.05
TRIM28-213ENST00000598355 IFT80Q9P2H3 777 aaPredicted RBP15.39■□□□□ 0.05
TRIM28-213ENST00000598355 CTNNAL1Q9UBT7 734 aa15.39■□□□□ 0.05
TRIM28-213ENST00000598355 RUVBL1Q9Y265 456 aaKnown RBP15.39■□□□□ 0.05
TRIM28-213ENST00000598355 SCN3AQ9NY46 2000 aa15.39■□□□□ 0.05
TRIM28-213ENST00000598355 IGLV3-12A0A075B6K2 115 aa15.38■□□□□ 0.05
TRIM28-213ENST00000598355 PABPN1LA6NDY0 278 aaKnown RBP15.38■□□□□ 0.05
TRIM28-213ENST00000598355 TXNDC9O14530 226 aa15.38■□□□□ 0.05
TRIM28-213ENST00000598355 GUCA1CO95843 209 aa15.38■□□□□ 0.05
TRIM28-213ENST00000598355 ANXA5P08758 320 aa15.38■□□□□ 0.05
TRIM28-213ENST00000598355 CCDC166P0CW27 439 aa15.38■□□□□ 0.05
TRIM28-213ENST00000598355 SFTPCP11686 197 aa15.38■□□□□ 0.05
TRIM28-213ENST00000598355 CDH1P12830 882 aa15.38■□□□□ 0.05
TRIM28-213ENST00000598355 SLC26A3P40879 764 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 86.8 ms