RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 SNRNP200O75643 2136 aaKnown RBP12.95□□□□□ -0.34
TRIM28-211ENST00000597968 IGHV1-45A0A0A0MS14 117 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 IGKV1-8A0A0C4DH67 115 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 ENO4A6NNW6 628 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 MASP2O00187 686 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 E2F3O00716 465 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 NRDCO43847 1150 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 KIF5CO60282 957 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 CEP104O60308 925 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 MED26O95402 600 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 CLDN1O95832 211 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 HEXBP07686 556 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 STSP08842 583 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 AVPR1BP47901 424 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 TNFSF10P50591 281 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 TERF1P54274 439 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 ARG2P78540 354 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 CCZ1BP86790 482 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 CCZ1P86791 482 aaPredicted RBP12.94□□□□□ -0.34
TRIM28-211ENST00000597968 Q0VFX4 171 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 THOC5Q13769 683 aaKnown RBP12.94□□□□□ -0.34
TRIM28-211ENST00000597968 DHX34Q14147 1143 aaKnown RBP12.94□□□□□ -0.34
TRIM28-211ENST00000597968 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.94□□□□□ -0.346e-9■■■□□ 15.4
TRIM28-211ENST00000597968 ACSBG2Q5FVE4 666 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 VWA2Q5GFL6 755 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 UGT3A1Q6NUS8 523 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 CASC4Q6P4E1 433 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 TMEM205Q6UW68 189 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 SHISA6Q6ZSJ9 500 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 PCGF5Q86SE9 256 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 TICAM1Q8IUC6 712 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 ARHGEF39Q8N4T4 335 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 PRELID2Q8N945 189 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 DNAJB8Q8NHS0 232 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 MCOLN3Q8TDD5 553 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 ZNF480Q8WV37 535 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 PKP4Q99569 1192 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 TUBB6Q9BUF5 446 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 ACAT2Q9BWD1 397 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 ZNF700Q9H0M5 742 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 ZNF160Q9HCG1 818 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 OLAHQ9NV23 265 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 TMEM184CQ9NVA4 438 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 TRPC4Q9UBN4 977 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 TAC3Q9UHF0 121 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 TEKT2Q9UIF3 430 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 RUVBL2Q9Y230 463 aaKnown RBP12.94□□□□□ -0.34
TRIM28-211ENST00000597968 PCDHGB6Q9Y5F9 930 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 CSAG2Q9Y5P2 127 aa12.94□□□□□ -0.34
TRIM28-211ENST00000597968 HIVEP3Q5T1R4 2406 aa12.93□□□□□ -0.34
TRIM28-211ENST00000597968 A1L4Q6 167 aa12.93□□□□□ -0.34
TRIM28-211ENST00000597968 CTAGE9A4FU28 777 aa12.93□□□□□ -0.34
TRIM28-211ENST00000597968 WFS1O76024 890 aa12.93□□□□□ -0.34
TRIM28-211ENST00000597968 KLHL18O94889 574 aa12.93□□□□□ -0.34
TRIM28-211ENST00000597968 NSA2O95478 260 aaKnown RBP12.93□□□□□ -0.34
TRIM28-211ENST00000597968 ATXN8OSP0DMR3 200 aa12.93□□□□□ -0.34
TRIM28-211ENST00000597968 CCND1P24385 295 aa12.93□□□□□ -0.34
TRIM28-211ENST00000597968 DCTP40126 519 aa12.93□□□□□ -0.34
TRIM28-211ENST00000597968 MAGEA3P43357 314 aa12.93□□□□□ -0.34
TRIM28-211ENST00000597968 RPS15AP62244 130 aaKnown RBP12.93□□□□□ -0.34
TRIM28-211ENST00000597968 GPS1Q13098 491 aa12.93□□□□□ -0.34
TRIM28-211ENST00000597968 ZNF324BQ6AW86 544 aaPredicted RBP12.93□□□□□ -0.34
TRIM28-211ENST00000597968 ZNF470Q6ECI4 717 aa12.93□□□□□ -0.34
TRIM28-211ENST00000597968 SUSD1Q6UWL2 747 aa12.93□□□□□ -0.34
TRIM28-211ENST00000597968 CES3Q6UWW8 571 aa12.93□□□□□ -0.34
TRIM28-211ENST00000597968 CAND1Q86VP6 1230 aaKnown RBP12.93□□□□□ -0.34
TRIM28-211ENST00000597968 TMEM151BQ8IW70 566 aa12.93□□□□□ -0.34
TRIM28-211ENST00000597968 LRRC56Q8IYG6 542 aaPredicted RBP12.93□□□□□ -0.34
TRIM28-211ENST00000597968 RASGEF1CQ8N431 466 aa12.93□□□□□ -0.34
TRIM28-211ENST00000597968 METTL27Q8N6F8 245 aaPredicted RBP12.93□□□□□ -0.34
TRIM28-211ENST00000597968 AMER3Q8N944 861 aa12.93□□□□□ -0.34
TRIM28-211ENST00000597968 PSMF1Q92530 271 aa12.93□□□□□ -0.34
TRIM28-211ENST00000597968 MMABQ96EY8 250 aaPredicted RBP12.93□□□□□ -0.34
TRIM28-211ENST00000597968 CNDP1Q96KN2 507 aa12.93□□□□□ -0.34
TRIM28-211ENST00000597968 C19orf25Q9UFG5 118 aaPredicted RBP12.93□□□□□ -0.34
TRIM28-211ENST00000597968 POLEQ07864 2286 aa12.92□□□□□ -0.34
TRIM28-211ENST00000597968 ZCWPW2A0A1B0GU75 182 aa12.92□□□□□ -0.34
TRIM28-211ENST00000597968 TCRBV7S3A2A0A539 114 aa12.92□□□□□ -0.34
TRIM28-211ENST00000597968 GOLGA8KD6RF30 607 aa12.92□□□□□ -0.34
TRIM28-211ENST00000597968 GOLGA8TH3BQL2 631 aa12.92□□□□□ -0.34
TRIM28-211ENST00000597968 SMAPO00193 183 aa12.92□□□□□ -0.34
TRIM28-211ENST00000597968 LRRTM2O43300 516 aa12.92□□□□□ -0.34
TRIM28-211ENST00000597968 FOXS1O43638 330 aa12.92□□□□□ -0.34
TRIM28-211ENST00000597968 CRYABP02511 175 aaKnown RBP12.92□□□□□ -0.34
TRIM28-211ENST00000597968 KRT14P02533 472 aa12.92□□□□□ -0.34
TRIM28-211ENST00000597968 IL10P22301 178 aa12.92□□□□□ -0.34
TRIM28-211ENST00000597968 SP140Q13342 867 aa12.92□□□□□ -0.34
TRIM28-211ENST00000597968 PTK6Q13882 451 aa12.92□□□□□ -0.34
TRIM28-211ENST00000597968 TRIP13Q15645 432 aaPredicted RBP12.92□□□□□ -0.34
TRIM28-211ENST00000597968 CYP1B1Q16678 543 aa12.92□□□□□ -0.34
TRIM28-211ENST00000597968 LONRF1Q17RB8 773 aa12.92□□□□□ -0.34
TRIM28-211ENST00000597968 HKDC1Q2TB90 917 aa12.92□□□□□ -0.34
TRIM28-211ENST00000597968 NIPAL1Q6NVV3 410 aa12.92□□□□□ -0.34
TRIM28-211ENST00000597968 LINC00696Q6ZRV3 163 aa12.92□□□□□ -0.34
TRIM28-211ENST00000597968 LAPTM4BQ86VI4 370 aa12.92□□□□□ -0.34
TRIM28-211ENST00000597968 OR1N1Q8NGS0 311 aa12.92□□□□□ -0.34
TRIM28-211ENST00000597968 SUN3Q8TAQ9 357 aa12.92□□□□□ -0.34
TRIM28-211ENST00000597968 METTL21AQ8WXB1 218 aa12.92□□□□□ -0.34
TRIM28-211ENST00000597968 RELTQ969Z4 430 aa12.92□□□□□ -0.34
TRIM28-211ENST00000597968 PBKQ96KB5 322 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms