RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 CRYL1Q9Y2S2 319 aa20.02■□□□□ 0.8
VPS53-216ENST00000574029 HEATR5BQ9P2D3 2071 aa20.02■□□□□ 0.8
VPS53-216ENST00000574029 PFDN6O15212 129 aa20.01■□□□□ 0.79
VPS53-216ENST00000574029 FOXS1O43638 330 aa20.01■□□□□ 0.79
VPS53-216ENST00000574029 CHRM3P20309 590 aa20.01■□□□□ 0.79
VPS53-216ENST00000574029 HSD17B2P37059 387 aa20.01■□□□□ 0.79
VPS53-216ENST00000574029 PRDX1Q06830 199 aaKnown RBP20.01■□□□□ 0.79
VPS53-216ENST00000574029 KLHL38Q2WGJ6 581 aa20.01■□□□□ 0.79
VPS53-216ENST00000574029 MEI1Q5TIA1 1274 aa20.01■□□□□ 0.79
VPS53-216ENST00000574029 ICE2Q659A1 982 aa20.01■□□□□ 0.79
VPS53-216ENST00000574029 SP5Q6BEB4 398 aaPredicted RBP20.01■□□□□ 0.79
VPS53-216ENST00000574029 MMABQ96EY8 250 aaPredicted RBP20.01■□□□□ 0.79
VPS53-216ENST00000574029 PKP4Q99569 1192 aa20.01■□□□□ 0.79
VPS53-216ENST00000574029 TSGA10Q9BZW7 698 aa20.01■□□□□ 0.79
VPS53-216ENST00000574029 ZNF700Q9H0M5 742 aa20.01■□□□□ 0.79
VPS53-216ENST00000574029 FAM114A2Q9NRY5 505 aa20.01■□□□□ 0.79
VPS53-216ENST00000574029 UTP6Q9NYH9 597 aaKnown RBP20.01■□□□□ 0.79
VPS53-216ENST00000574029 TAC3Q9UHF0 121 aa20.01■□□□□ 0.79
VPS53-216ENST00000574029 GUCA1BQ9UMX6 200 aa20.01■□□□□ 0.79
VPS53-216ENST00000574029 ZKSCAN5Q9Y2L8 839 aa20.01■□□□□ 0.79
VPS53-216ENST00000574029 ARHGAP10A1A4S6 786 aa20■□□□□ 0.79
VPS53-216ENST00000574029 WFS1O76024 890 aa20■□□□□ 0.79
VPS53-216ENST00000574029 CCNDBP1O95273 360 aa20■□□□□ 0.79
VPS53-216ENST00000574029 HEXBP07686 556 aa20■□□□□ 0.79
VPS53-216ENST00000574029 CELA2AP08217 269 aa20■□□□□ 0.79
VPS53-216ENST00000574029 PRF1P14222 555 aa20■□□□□ 0.79
VPS53-216ENST00000574029 PKMP14618 531 aaKnown RBP20■□□□□ 0.79
VPS53-216ENST00000574029 EZRP15311 586 aaKnown RBP20■□□□□ 0.79
VPS53-216ENST00000574029 TPSB2P20231 275 aa20■□□□□ 0.79
VPS53-216ENST00000574029 OGNP20774 298 aaKnown RBP20■□□□□ 0.79
VPS53-216ENST00000574029 PNLIPRP1P54315 467 aa20■□□□□ 0.79
VPS53-216ENST00000574029 KCNK10P57789 538 aa20■□□□□ 0.79
VPS53-216ENST00000574029 CDK16Q00536 496 aa20■□□□□ 0.79
VPS53-216ENST00000574029 PCOLCEQ15113 449 aa20■□□□□ 0.79
VPS53-216ENST00000574029 RPS6KA1Q15418 735 aa20■□□□□ 0.79
VPS53-216ENST00000574029 TPSAB1Q15661 275 aa20■□□□□ 0.79
VPS53-216ENST00000574029 FAAH2Q6GMR7 532 aa20■□□□□ 0.79
VPS53-216ENST00000574029 KIAA0930Q6ICG6 404 aaPredicted RBP20■□□□□ 0.79
VPS53-216ENST00000574029 TMEM205Q6UW68 189 aa20■□□□□ 0.79
VPS53-216ENST00000574029 LRRC8AQ8IWT6 810 aa20■□□□□ 0.79
VPS53-216ENST00000574029 SRRM1Q8IYB3 904 aaKnown RBP20■□□□□ 0.79
VPS53-216ENST00000574029 RNF32Q9H0A6 362 aa20■□□□□ 0.79
VPS53-216ENST00000574029 ZNF839A8K0R7 811 aa19.99■□□□□ 0.79
VPS53-216ENST00000574029 TXNDC9O14530 226 aa19.99■□□□□ 0.79
VPS53-216ENST00000574029 CATP04040 527 aaKnown RBP19.99■□□□□ 0.79
VPS53-216ENST00000574029 ANXA5P08758 320 aa19.99■□□□□ 0.79
VPS53-216ENST00000574029 EFNA3P52797 238 aa19.99■□□□□ 0.79
VPS53-216ENST00000574029 NEK10Q6ZWH5 1172 aa19.99■□□□□ 0.79
VPS53-216ENST00000574029 CENPUQ71F23 418 aa19.99■□□□□ 0.79
VPS53-216ENST00000574029 GSTA5Q7RTV2 222 aa19.99■□□□□ 0.79
VPS53-216ENST00000574029 ZC3H7AQ8IWR0 971 aaKnown RBP19.99■□□□□ 0.79
VPS53-216ENST00000574029 FBXO15Q8NCQ5 510 aaPredicted RBP19.99■□□□□ 0.79
VPS53-216ENST00000574029 RERGQ96A58 199 aaPredicted RBP19.99■□□□□ 0.79
VPS53-216ENST00000574029 IMMP1LQ96LU5 166 aa19.99■□□□□ 0.79
VPS53-216ENST00000574029 DRC3Q9H069 523 aa19.99■□□□□ 0.79
VPS53-216ENST00000574029 COPG2Q9UBF2 871 aa19.99■□□□□ 0.79
VPS53-216ENST00000574029 PCYOX1Q9UHG3 505 aa19.99■□□□□ 0.79
VPS53-216ENST00000574029 SVILO95425 2214 aa19.99■□□□□ 0.79
VPS53-216ENST00000574029 TEP1Q99973 2627 aaKnown RBP19.99■□□□□ 0.79
VPS53-216ENST00000574029 A0A0A6YYC8 382 aaPredicted RBP19.98■□□□□ 0.79
VPS53-216ENST00000574029 TCRBV7S3A2A0A539 114 aa19.98■□□□□ 0.79
VPS53-216ENST00000574029 E5RI56 91 aa19.98■□□□□ 0.79
VPS53-216ENST00000574029 PRSS44E7EML9 344 aa19.98■□□□□ 0.79
VPS53-216ENST00000574029 E7ENX8 843 aa19.98■□□□□ 0.79
VPS53-216ENST00000574029 I3L1I5 382 aaPredicted RBP19.98■□□□□ 0.79
VPS53-216ENST00000574029 WDPCPO95876 746 aa19.98■□□□□ 0.79
VPS53-216ENST00000574029 SLC16A8O95907 504 aa19.98■□□□□ 0.79
VPS53-216ENST00000574029 F10P00742 488 aa19.98■□□□□ 0.79
VPS53-216ENST00000574029 ITGAMP11215 1152 aa19.98■□□□□ 0.79
VPS53-216ENST00000574029 ICAM2P13598 275 aa19.98■□□□□ 0.79
VPS53-216ENST00000574029 CLCN7P51798 805 aa19.98■□□□□ 0.79
VPS53-216ENST00000574029 AP2B1P63010 937 aa19.98■□□□□ 0.79
VPS53-216ENST00000574029 ABATP80404 500 aa19.98■□□□□ 0.79
VPS53-216ENST00000574029 TAP2Q03519 686 aa19.98■□□□□ 0.79
VPS53-216ENST00000574029 TSTA3Q13630 321 aaPredicted RBP19.98■□□□□ 0.79
VPS53-216ENST00000574029 FAM53BQ14153 422 aa19.98■□□□□ 0.79
VPS53-216ENST00000574029 KCNJ11Q14654 390 aa19.98■□□□□ 0.79
VPS53-216ENST00000574029 SYT16Q17RD7 645 aa19.98■□□□□ 0.79
VPS53-216ENST00000574029 ARMC3Q5W041 872 aa19.98■□□□□ 0.79
VPS53-216ENST00000574029 HIBCHQ6NVY1 386 aaPredicted RBP19.98■□□□□ 0.79
VPS53-216ENST00000574029 GFRALQ6UXV0 394 aa19.98■□□□□ 0.79
VPS53-216ENST00000574029 CILP2Q8IUL8 1156 aa19.98■□□□□ 0.79
VPS53-216ENST00000574029 PPFIBP2Q8ND30 876 aa19.98■□□□□ 0.79
VPS53-216ENST00000574029 ZNF480Q8WV37 535 aa19.98■□□□□ 0.79
VPS53-216ENST00000574029 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP19.98■□□□□ 0.79
VPS53-216ENST00000574029 ABI3Q9P2A4 366 aa19.98■□□□□ 0.79
VPS53-216ENST00000574029 P2RX6O15547 441 aa19.97■□□□□ 0.79
VPS53-216ENST00000574029 KCNJ1P48048 391 aa19.97■□□□□ 0.79
VPS53-216ENST00000574029 NEPROQ6NW34 567 aa19.97■□□□□ 0.79
VPS53-216ENST00000574029 REXO1L1PQ8IX06 675 aa19.97■□□□□ 0.79
VPS53-216ENST00000574029 LRRC56Q8IYG6 542 aaPredicted RBP19.97■□□□□ 0.79
VPS53-216ENST00000574029 DNAJB8Q8NHS0 232 aa19.97■□□□□ 0.79
VPS53-216ENST00000574029 SLC30A3Q99726 388 aa19.97■□□□□ 0.79
VPS53-216ENST00000574029 TUBB6Q9BUF5 446 aa19.97■□□□□ 0.79
VPS53-216ENST00000574029 UNKQ9C0B0 810 aaKnown RBP19.97■□□□□ 0.79
VPS53-216ENST00000574029 INTS10Q9NVR2 710 aaKnown RBP19.97■□□□□ 0.79
VPS53-216ENST00000574029 MKL2Q9ULH7 1088 aa19.97■□□□□ 0.79
VPS53-216ENST00000574029 VPS9D1Q9Y2B5 631 aa19.97■□□□□ 0.79
VPS53-216ENST00000574029 LRBAP50851 2863 aa19.97■□□□□ 0.79
VPS53-216ENST00000574029 SMAPO00193 183 aa19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 988 ms