RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 ZNF358Q9NW07 568 aa15.29■□□□□ 0.04
CLK3-223ENST00000568488 LRFN1Q9P244 771 aa15.29■□□□□ 0.04
CLK3-223ENST00000568488 EDARQ9UNE0 448 aa15.29■□□□□ 0.04
CLK3-223ENST00000568488 RUVBL1Q9Y265 456 aaKnown RBP15.29■□□□□ 0.04
CLK3-223ENST00000568488 HYOU1Q9Y4L1 999 aa15.29■□□□□ 0.04
CLK3-223ENST00000568488 HRH3Q9Y5N1 445 aa15.29■□□□□ 0.04
CLK3-223ENST00000568488 AKAP6Q13023 2319 aa15.29■□□□□ 0.04
CLK3-223ENST00000568488 FAM237BA0A1B0GVD1 139 aa15.28■□□□□ 0.04
CLK3-223ENST00000568488 KIAA1324LA8MWY0 1029 aaPredicted RBP15.28■□□□□ 0.04
CLK3-223ENST00000568488 HACD1B0YJ81 288 aa15.28■□□□□ 0.04
CLK3-223ENST00000568488 CTAG2O75638 210 aa15.28■□□□□ 0.04
CLK3-223ENST00000568488 TPH1P17752 444 aa15.28■□□□□ 0.04
CLK3-223ENST00000568488 YBX1P67809 324 aaKnown RBP15.28■□□□□ 0.04
CLK3-223ENST00000568488 PMPCAQ10713 525 aa15.28■□□□□ 0.04
CLK3-223ENST00000568488 HKDC1Q2TB90 917 aa15.28■□□□□ 0.04
CLK3-223ENST00000568488 MINDY4Q4G0A6 757 aa15.28■□□□□ 0.04
CLK3-223ENST00000568488 DENND5AQ6IQ26 1287 aa15.28■□□□□ 0.04
CLK3-223ENST00000568488 ZZZ3Q8IYH5 903 aa15.28■□□□□ 0.04
CLK3-223ENST00000568488 CSNK1A1LQ8N752 337 aa15.28■□□□□ 0.04
CLK3-223ENST00000568488 RMND5BQ96G75 393 aaPredicted RBP15.28■□□□□ 0.04
CLK3-223ENST00000568488 PWWP2AQ96N64 755 aa15.28■□□□□ 0.04
CLK3-223ENST00000568488 CYTH2Q99418 400 aa15.28■□□□□ 0.04
CLK3-223ENST00000568488 C19orf25Q9UFG5 118 aaPredicted RBP15.28■□□□□ 0.04
CLK3-223ENST00000568488 A0A1B0GTH6 734 aa15.27■□□□□ 0.04
CLK3-223ENST00000568488 OR51F1A6NGY5 319 aa15.27■□□□□ 0.04
CLK3-223ENST00000568488 TFECO14948 347 aaPredicted RBP15.27■□□□□ 0.04
CLK3-223ENST00000568488 KLK8O60259 260 aa15.27■□□□□ 0.04
CLK3-223ENST00000568488 OR1I1O60431 355 aa15.27■□□□□ 0.04
CLK3-223ENST00000568488 NEURL1O76050 574 aa15.27■□□□□ 0.04
CLK3-223ENST00000568488 MSNP26038 577 aaKnown RBP15.27■□□□□ 0.04
CLK3-223ENST00000568488 CCR7P32248 378 aa15.27■□□□□ 0.04
CLK3-223ENST00000568488 TYRO3Q06418 890 aa15.27■□□□□ 0.04
CLK3-223ENST00000568488 NR1I3Q14994 352 aa15.27■□□□□ 0.04
CLK3-223ENST00000568488 CLEC9AQ6UXN8 241 aa15.27■□□□□ 0.04
CLK3-223ENST00000568488 UNC5DQ6UXZ4 953 aa15.27■□□□□ 0.04
CLK3-223ENST00000568488 PACS1Q6VY07 963 aa15.27■□□□□ 0.04
CLK3-223ENST00000568488 RPRMLQ8N4K4 120 aa15.27■□□□□ 0.04
CLK3-223ENST00000568488 RAB42Q8N4Z0 105 aa15.27■□□□□ 0.04
CLK3-223ENST00000568488 LRRN4CLQ8ND94 238 aa15.27■□□□□ 0.04
CLK3-223ENST00000568488 ALPK1Q96QP1 1244 aa15.27■□□□□ 0.04
CLK3-223ENST00000568488 OLFM1Q99784 485 aa15.27■□□□□ 0.04
CLK3-223ENST00000568488 GPATCH1Q9BRR8 931 aaKnown RBP15.27■□□□□ 0.04
CLK3-223ENST00000568488 DPH7Q9BTV6 452 aa15.27■□□□□ 0.04
CLK3-223ENST00000568488 ACAT2Q9BWD1 397 aa15.27■□□□□ 0.04
CLK3-223ENST00000568488 RAB11FIP5Q9BXF6 653 aa15.27■□□□□ 0.04
CLK3-223ENST00000568488 VN1R1Q9GZP7 353 aa15.27■□□□□ 0.04
CLK3-223ENST00000568488 NENFQ9UMX5 172 aa15.27■□□□□ 0.04
CLK3-223ENST00000568488 SCN2AQ99250 2005 aa15.26■□□□□ 0.03
CLK3-223ENST00000568488 F8W8V4 182 aa15.26■□□□□ 0.03
CLK3-223ENST00000568488 FOXS1O43638 330 aa15.26■□□□□ 0.03
CLK3-223ENST00000568488 VPS26AO75436 327 aa15.26■□□□□ 0.03
CLK3-223ENST00000568488 SERPINC1P01008 464 aa15.26■□□□□ 0.03
CLK3-223ENST00000568488 EMP3P54852 163 aa15.26■□□□□ 0.03
CLK3-223ENST00000568488 ZBED6P86452 979 aa15.26■□□□□ 0.03
CLK3-223ENST00000568488 POU6F1Q14863 301 aa15.26■□□□□ 0.03
CLK3-223ENST00000568488 ANKRD20A2Q5SQ80 823 aa15.26■□□□□ 0.03
CLK3-223ENST00000568488 ANKRD20A1Q5TYW2 823 aa15.26■□□□□ 0.03
CLK3-223ENST00000568488 ANKRD20A3Q5VUR7 823 aa15.26■□□□□ 0.03
CLK3-223ENST00000568488 PRIMA1Q86XR5 153 aa15.26■□□□□ 0.03
CLK3-223ENST00000568488 SLC5A8Q8N695 610 aa15.26■□□□□ 0.03
CLK3-223ENST00000568488 ACRBPQ8NEB7 543 aa15.26■□□□□ 0.03
CLK3-223ENST00000568488 OR2A1Q8NGT9 310 aa15.26■□□□□ 0.03
CLK3-223ENST00000568488 GOT1L1Q8NHS2 421 aaPredicted RBP15.26■□□□□ 0.03
CLK3-223ENST00000568488 STYXQ8WUJ0 223 aa15.26■□□□□ 0.03
CLK3-223ENST00000568488 NUDT8Q8WV74 236 aa15.26■□□□□ 0.03
CLK3-223ENST00000568488 ASZ1Q8WWH4 475 aa15.26■□□□□ 0.03
CLK3-223ENST00000568488 RAD51AP1Q96B01 352 aa15.26■□□□□ 0.03
CLK3-223ENST00000568488 LRRC45Q96CN5 670 aa15.26■□□□□ 0.03
CLK3-223ENST00000568488 SEC16BQ96JE7 1060 aa15.26■□□□□ 0.03
CLK3-223ENST00000568488 C18orf12Q96KH6 178 aa15.26■□□□□ 0.03
CLK3-223ENST00000568488 FERMT1Q9BQL6 677 aa15.26■□□□□ 0.03
CLK3-223ENST00000568488 DRC3Q9H069 523 aa15.26■□□□□ 0.03
CLK3-223ENST00000568488 CLEC4MQ9H2X3 399 aaPredicted RBP15.26■□□□□ 0.03
CLK3-223ENST00000568488 TP63Q9H3D4 680 aaPredicted RBP15.26■□□□□ 0.03
CLK3-223ENST00000568488 CDCP1Q9H5V8 836 aa15.26■□□□□ 0.03
CLK3-223ENST00000568488 FEZ2Q9UHY8 353 aaPredicted RBP15.26■□□□□ 0.03
CLK3-223ENST00000568488 KLK4Q9Y5K2 254 aa15.26■□□□□ 0.03
CLK3-223ENST00000568488 OR2A25A4D2G3 310 aa15.25■□□□□ 0.03
CLK3-223ENST00000568488 KRT87PA6NCN2 255 aa15.25■□□□□ 0.03
CLK3-223ENST00000568488 OR2W5A6NFC9 320 aa15.25■□□□□ 0.03
CLK3-223ENST00000568488 SOWAHDA6NJG2 315 aa15.25■□□□□ 0.03
CLK3-223ENST00000568488 SPOPO43791 374 aa15.25■□□□□ 0.03
CLK3-223ENST00000568488 PRMT3O60678 531 aa15.25■□□□□ 0.03
CLK3-223ENST00000568488 SLC25A12O75746 678 aa15.25■□□□□ 0.03
CLK3-223ENST00000568488 TMEM253P0C7T8 217 aa15.25■□□□□ 0.03
CLK3-223ENST00000568488 CMPK1P30085 196 aa15.25■□□□□ 0.03
CLK3-223ENST00000568488 RFC3P40938 356 aa15.25■□□□□ 0.03
CLK3-223ENST00000568488 NUP107P57740 925 aa15.25■□□□□ 0.03
CLK3-223ENST00000568488 ACTN3Q08043 901 aaPredicted RBP15.25■□□□□ 0.03
CLK3-223ENST00000568488 EXT1Q16394 746 aa15.25■□□□□ 0.03
CLK3-223ENST00000568488 CCSMST1Q4G0I0 132 aa15.25■□□□□ 0.03
CLK3-223ENST00000568488 ZNF468Q5VIY5 522 aaPredicted RBP15.25■□□□□ 0.03
CLK3-223ENST00000568488 WFDC11Q8NEX6 87 aa15.25■□□□□ 0.03
CLK3-223ENST00000568488 OR10Q1Q8NGQ4 319 aa15.25■□□□□ 0.03
CLK3-223ENST00000568488 M1APQ8TC57 530 aa15.25■□□□□ 0.03
CLK3-223ENST00000568488 SKA2Q8WVK7 121 aaPredicted RBP15.25■□□□□ 0.03
CLK3-223ENST00000568488 ANP32EQ9BTT0 268 aa15.25■□□□□ 0.03
CLK3-223ENST00000568488 NAT10Q9H0A0 1025 aaKnown RBP15.25■□□□□ 0.03
CLK3-223ENST00000568488 TTC7AQ9ULT0 858 aaPredicted RBP15.25■□□□□ 0.03
CLK3-223ENST00000568488 L3MBTL1Q9Y468 752 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms