RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 RAD1O60671 282 aa18.72■□□□□ 0.59
CLN3-225ENST00000566824 OR2B3O76000 313 aa18.72■□□□□ 0.59
CLN3-225ENST00000566824 MED26O95402 600 aa18.72■□□□□ 0.59
CLN3-225ENST00000566824 MT-ND3P03897 115 aa18.72■□□□□ 0.59
CLN3-225ENST00000566824 COL6A2P12110 1019 aa18.72■□□□□ 0.59
CLN3-225ENST00000566824 EPORP19235 508 aa18.72■□□□□ 0.59
CLN3-225ENST00000566824 RASA2Q15283 850 aa18.72■□□□□ 0.59
CLN3-225ENST00000566824 CDKL4Q5MAI5 379 aa18.72■□□□□ 0.59
CLN3-225ENST00000566824 LCN10Q6JVE6 187 aa18.72■□□□□ 0.59
CLN3-225ENST00000566824 VASH2Q86V25 355 aa18.72■□□□□ 0.59
CLN3-225ENST00000566824 DTWD1Q8N5C7 304 aa18.72■□□□□ 0.59
CLN3-225ENST00000566824 ZNF655Q8N720 491 aaPredicted RBP18.72■□□□□ 0.59
CLN3-225ENST00000566824 ZNF248Q8NDW4 579 aa18.72■□□□□ 0.59
CLN3-225ENST00000566824 ZNF740Q8NDX6 193 aa18.72■□□□□ 0.59
CLN3-225ENST00000566824 OR8K5Q8NH50 307 aa18.72■□□□□ 0.59
CLN3-225ENST00000566824 KCNE4Q8WWG9 221 aa18.72■□□□□ 0.59
CLN3-225ENST00000566824 ZNF285Q96NJ3 590 aa18.72■□□□□ 0.59
CLN3-225ENST00000566824 SELENOSQ9BQE4 189 aa18.72■□□□□ 0.59
CLN3-225ENST00000566824 HAUS8Q9BT25 410 aa18.72■□□□□ 0.59
CLN3-225ENST00000566824 FANCEQ9HB96 536 aa18.72■□□□□ 0.59
CLN3-225ENST00000566824 TMEM184CQ9NVA4 438 aa18.72■□□□□ 0.59
CLN3-225ENST00000566824 CPSF2Q9P2I0 782 aaKnown RBP18.72■□□□□ 0.59
CLN3-225ENST00000566824 ANKMY1Q9P2S6 941 aa18.72■□□□□ 0.59
CLN3-225ENST00000566824 XPR1Q9UBH6 696 aa18.72■□□□□ 0.59
CLN3-225ENST00000566824 SERTAD3Q9UJW9 196 aa18.72■□□□□ 0.59
CLN3-225ENST00000566824 CCDC88CQ9P219 2028 aa18.71■□□□□ 0.59
CLN3-225ENST00000566824 H0YGG7 62 aa18.71■□□□□ 0.59
CLN3-225ENST00000566824 KLK8O60259 260 aa18.71■□□□□ 0.59
CLN3-225ENST00000566824 CDH16O75309 829 aa18.71■□□□□ 0.59
CLN3-225ENST00000566824 S100BP04271 92 aaPredicted RBP18.71■□□□□ 0.59
CLN3-225ENST00000566824 TUBBP07437 444 aa18.71■□□□□ 0.59
CLN3-225ENST00000566824 LIPCP11150 499 aa18.71■□□□□ 0.59
CLN3-225ENST00000566824 VARSP26640 1264 aaKnown RBP18.71■□□□□ 0.59
CLN3-225ENST00000566824 CD82P27701 267 aa18.71■□□□□ 0.59
CLN3-225ENST00000566824 GCGRP47871 477 aa18.71■□□□□ 0.59
CLN3-225ENST00000566824 ARF3P61204 181 aaPredicted RBP18.71■□□□□ 0.59
CLN3-225ENST00000566824 GPS2Q13227 327 aa18.71■□□□□ 0.59
CLN3-225ENST00000566824 ST3GAL2Q16842 350 aa18.71■□□□□ 0.59
CLN3-225ENST00000566824 PFKFB4Q16877 469 aa18.71■□□□□ 0.59
CLN3-225ENST00000566824 ZC3H12BQ5HYM0 836 aaKnown RBP18.71■□□□□ 0.59
CLN3-225ENST00000566824 KLC3Q6P597 504 aa18.71■□□□□ 0.59
CLN3-225ENST00000566824 FAM199XQ6PEV8 388 aaPredicted RBP18.71■□□□□ 0.59
CLN3-225ENST00000566824 BPHLQ86WA6 291 aaPredicted RBP18.71■□□□□ 0.59
CLN3-225ENST00000566824 SPACA3Q8IXA5 215 aa18.71■□□□□ 0.59
CLN3-225ENST00000566824 ABHD11Q8NFV4 315 aa18.71■□□□□ 0.59
CLN3-225ENST00000566824 SLC5A11Q8WWX8 675 aa18.71■□□□□ 0.59
CLN3-225ENST00000566824 N4BP2L2Q92802 583 aaPredicted RBP18.71■□□□□ 0.59
CLN3-225ENST00000566824 OR2A5Q96R48 311 aa18.71■□□□□ 0.59
CLN3-225ENST00000566824 ZFYVE21Q9BQ24 234 aa18.71■□□□□ 0.59
CLN3-225ENST00000566824 CD244Q9BZW8 370 aa18.71■□□□□ 0.59
CLN3-225ENST00000566824 C12orf65Q9H3J6 166 aaKnown RBP18.71■□□□□ 0.59
CLN3-225ENST00000566824 EMCNQ9ULC0 261 aa18.71■□□□□ 0.59
CLN3-225ENST00000566824 LOC101059948A0A1B0GTJ6 334 aa18.7■□□□□ 0.58
CLN3-225ENST00000566824 E7EQ34 232 aa18.7■□□□□ 0.58
CLN3-225ENST00000566824 P2RX6O15547 441 aa18.7■□□□□ 0.58
CLN3-225ENST00000566824 KLK10O43240 276 aa18.7■□□□□ 0.58
CLN3-225ENST00000566824 CCNT2O60583 730 aaKnown RBP18.7■□□□□ 0.58
CLN3-225ENST00000566824 STK16O75716 305 aa18.7■□□□□ 0.58
CLN3-225ENST00000566824 KRT15P19012 456 aa18.7■□□□□ 0.58
CLN3-225ENST00000566824 WT1P19544 449 aaPredicted RBP18.7■□□□□ 0.58
CLN3-225ENST00000566824 BCL6P41182 706 aa18.7■□□□□ 0.58
CLN3-225ENST00000566824 ZNF844Q08AG5 666 aa18.7■□□□□ 0.58
CLN3-225ENST00000566824 IFFO1Q0D2I5 559 aa18.7■□□□□ 0.58
CLN3-225ENST00000566824 TSNAXIP1Q2TAA8 658 aa18.7■□□□□ 0.58
CLN3-225ENST00000566824 WASHC2DQ5SRD0 308 aa18.7■□□□□ 0.58
CLN3-225ENST00000566824 C6orf15Q6UXA7 325 aaPredicted RBP18.7■□□□□ 0.58
CLN3-225ENST00000566824 IQCKQ8N0W5 287 aa18.7■□□□□ 0.58
CLN3-225ENST00000566824 TCAIMQ8N3R3 496 aa18.7■□□□□ 0.58
CLN3-225ENST00000566824 OR4K1Q8NGD4 311 aa18.7■□□□□ 0.58
CLN3-225ENST00000566824 ACMSDQ8TDX5 336 aa18.7■□□□□ 0.58
CLN3-225ENST00000566824 UBTD2Q8WUN7 234 aa18.7■□□□□ 0.58
CLN3-225ENST00000566824 CABS1Q96KC9 395 aa18.7■□□□□ 0.58
CLN3-225ENST00000566824 RUFY1Q96T51 708 aa18.7■□□□□ 0.58
CLN3-225ENST00000566824 MACROD1Q9BQ69 325 aa18.7■□□□□ 0.58
CLN3-225ENST00000566824 ACTR5Q9H9F9 607 aaPredicted RBP18.7■□□□□ 0.58
CLN3-225ENST00000566824 PPCSQ9HAB8 311 aa18.7■□□□□ 0.58
CLN3-225ENST00000566824 DNAJC11Q9NVH1 559 aa18.7■□□□□ 0.58
CLN3-225ENST00000566824 WDR70Q9NW82 654 aa18.7■□□□□ 0.58
CLN3-225ENST00000566824 LGALS13Q9UHV8 139 aa18.7■□□□□ 0.58
CLN3-225ENST00000566824 DYRK1BQ9Y463 629 aa18.7■□□□□ 0.58
CLN3-225ENST00000566824 PCDHB3Q9Y5E6 796 aa18.7■□□□□ 0.58
CLN3-225ENST00000566824 PTPRQQ9UMZ3 2332 aa18.7■□□□□ 0.58
CLN3-225ENST00000566824 ZSCAN9O15535 394 aaPredicted RBP18.69■□□□□ 0.58
CLN3-225ENST00000566824 EFSO43281 561 aa18.69■□□□□ 0.58
CLN3-225ENST00000566824 SIX3O95343 332 aaPredicted RBP18.69■□□□□ 0.58
CLN3-225ENST00000566824 EIF2S1P05198 315 aaKnown RBP18.69■□□□□ 0.58
CLN3-225ENST00000566824 RBP1P09455 135 aa18.69■□□□□ 0.58
CLN3-225ENST00000566824 ATXN8OSP0DMR3 200 aa18.69■□□□□ 0.58
CLN3-225ENST00000566824 GFAPP14136 432 aa18.69■□□□□ 0.58
CLN3-225ENST00000566824 EZRP15311 586 aaKnown RBP18.69■□□□□ 0.58
CLN3-225ENST00000566824 RORAP35398 523 aa18.69■□□□□ 0.58
CLN3-225ENST00000566824 SETDB1Q15047 1291 aa18.69■□□□□ 0.58
CLN3-225ENST00000566824 HKDC1Q2TB90 917 aa18.69■□□□□ 0.58
CLN3-225ENST00000566824 BEND6Q5SZJ8 279 aaPredicted RBP18.69■□□□□ 0.58
CLN3-225ENST00000566824 C1orf189Q5VU69 101 aa18.69■□□□□ 0.58
CLN3-225ENST00000566824 CYB5D1Q6P9G0 228 aa18.69■□□□□ 0.58
CLN3-225ENST00000566824 NXPE4Q6UWF7 544 aa18.69■□□□□ 0.58
CLN3-225ENST00000566824 SLCO4C1Q6ZQN7 724 aa18.69■□□□□ 0.58
CLN3-225ENST00000566824 VN1R4Q7Z5H5 301 aa18.69■□□□□ 0.58
CLN3-225ENST00000566824 TMPRSS11BQ86T26 416 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms