RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 SVILO95425 2214 aa16.01■□□□□ 0.15
CLN3-211ENST00000564091 H3BMM5 538 aa16.01■□□□□ 0.15
CLN3-211ENST00000564091 FOXS1O43638 330 aa16.01■□□□□ 0.15
CLN3-211ENST00000564091 PSIP1O75475 530 aaKnown RBP16.01■□□□□ 0.15
CLN3-211ENST00000564091 BMP10O95393 424 aa16.01■□□□□ 0.15
CLN3-211ENST00000564091 WDPCPO95876 746 aa16.01■□□□□ 0.15
CLN3-211ENST00000564091 FDXRP22570 491 aa16.01■□□□□ 0.15
CLN3-211ENST00000564091 ATP5DP30049 168 aa16.01■□□□□ 0.15
CLN3-211ENST00000564091 EFNA3P52797 238 aa16.01■□□□□ 0.15
CLN3-211ENST00000564091 SNRPNP63162 240 aaKnown RBP16.01■□□□□ 0.15
CLN3-211ENST00000564091 PRDX1Q06830 199 aaKnown RBP16.01■□□□□ 0.15
CLN3-211ENST00000564091 KCNJ11Q14654 390 aa16.01■□□□□ 0.15
CLN3-211ENST00000564091 RNF187Q5TA31 235 aaPredicted RBP16.01■□□□□ 0.15
CLN3-211ENST00000564091 ICE2Q659A1 982 aa16.01■□□□□ 0.15
CLN3-211ENST00000564091 ZNF425Q6IV72 752 aa16.01■□□□□ 0.15
CLN3-211ENST00000564091 DRICH1Q6PGQ1 229 aaPredicted RBP16.01■□□□□ 0.15
CLN3-211ENST00000564091 PLD3Q8IV08 490 aa16.01■□□□□ 0.15
CLN3-211ENST00000564091 MVB12AQ96EY5 273 aa16.01■□□□□ 0.15
CLN3-211ENST00000564091 SLC30A3Q99726 388 aa16.01■□□□□ 0.15
CLN3-211ENST00000564091 UNKQ9C0B0 810 aaKnown RBP16.01■□□□□ 0.15
CLN3-211ENST00000564091 MKKSQ9NPJ1 570 aaPredicted RBP16.01■□□□□ 0.15
CLN3-211ENST00000564091 C14orf105Q9NVL8 296 aa16.01■□□□□ 0.15
CLN3-211ENST00000564091 COPG2Q9UBF2 871 aa16.01■□□□□ 0.15
CLN3-211ENST00000564091 PCYOX1Q9UHG3 505 aa16.01■□□□□ 0.15
CLN3-211ENST00000564091 SOX13Q9UN79 622 aa16.01■□□□□ 0.15
CLN3-211ENST00000564091 MRPS2Q9Y399 296 aaKnown RBP16.01■□□□□ 0.15
CLN3-211ENST00000564091 A0A1W2PQ72 361 aa16■□□□□ 0.15
CLN3-211ENST00000564091 AP3B1O00203 1094 aa16■□□□□ 0.15
CLN3-211ENST00000564091 P2RX6O15547 441 aa16■□□□□ 0.15
CLN3-211ENST00000564091 PRPF4O43172 522 aaKnown RBP eCLIP16■□□□□ 0.15
CLN3-211ENST00000564091 AVILO75366 819 aa16■□□□□ 0.15
CLN3-211ENST00000564091 STATHP02808 62 aa16■□□□□ 0.15
CLN3-211ENST00000564091 ANXA5P08758 320 aa16■□□□□ 0.15
CLN3-211ENST00000564091 ITGAMP11215 1152 aa16■□□□□ 0.15
CLN3-211ENST00000564091 PKMP14618 531 aaKnown RBP16■□□□□ 0.15
CLN3-211ENST00000564091 PNLIPRP1P54315 467 aa16■□□□□ 0.15
CLN3-211ENST00000564091 PCOLCEQ15113 449 aa16■□□□□ 0.15
CLN3-211ENST00000564091 MEI1Q5TIA1 1274 aa16■□□□□ 0.15
CLN3-211ENST00000564091 GFRALQ6UXV0 394 aa16■□□□□ 0.15
CLN3-211ENST00000564091 CENPUQ71F23 418 aa16■□□□□ 0.15
CLN3-211ENST00000564091 ADCK2Q7Z695 626 aa16■□□□□ 0.15
CLN3-211ENST00000564091 ZC3H7AQ8IWR0 971 aaKnown RBP16■□□□□ 0.15
CLN3-211ENST00000564091 REXO1L1PQ8IX06 675 aa16■□□□□ 0.15
CLN3-211ENST00000564091 SHISA5Q8N114 240 aa16■□□□□ 0.15
CLN3-211ENST00000564091 ARHGEF39Q8N4T4 335 aa16■□□□□ 0.15
CLN3-211ENST00000564091 ZNF480Q8WV37 535 aa16■□□□□ 0.15
CLN3-211ENST00000564091 RELTQ969Z4 430 aa16■□□□□ 0.15
CLN3-211ENST00000564091 RERGQ96A58 199 aaPredicted RBP16■□□□□ 0.15
CLN3-211ENST00000564091 TCF12Q99081 682 aa16■□□□□ 0.15
CLN3-211ENST00000564091 TGIF2Q9GZN2 237 aa16■□□□□ 0.15
CLN3-211ENST00000564091 ZNF700Q9H0M5 742 aa16■□□□□ 0.15
CLN3-211ENST00000564091 FAM114A2Q9NRY5 505 aa16■□□□□ 0.15
CLN3-211ENST00000564091 RIC8BQ9NVN3 520 aa16■□□□□ 0.15
CLN3-211ENST00000564091 MKL2Q9ULH7 1088 aa16■□□□□ 0.15
CLN3-211ENST00000564091 CROCCQ5TZA2 2017 aa16■□□□□ 0.15
CLN3-211ENST00000564091 LOC102723996A0A087X1L8 192 aa15.99■□□□□ 0.15
CLN3-211ENST00000564091 TRGV8A0A0C4DH27 118 aa15.99■□□□□ 0.15
CLN3-211ENST00000564091 E5RI56 91 aa15.99■□□□□ 0.15
CLN3-211ENST00000564091 E7ENX8 843 aa15.99■□□□□ 0.15
CLN3-211ENST00000564091 HAT1O14929 419 aa15.99■□□□□ 0.15
CLN3-211ENST00000564091 PFDN6O15212 129 aa15.99■□□□□ 0.15
CLN3-211ENST00000564091 PHF2O75151 1096 aa15.99■□□□□ 0.15
CLN3-211ENST00000564091 SLC16A8O95907 504 aa15.99■□□□□ 0.15
CLN3-211ENST00000564091 SYF2O95926 243 aaKnown RBP15.99■□□□□ 0.15
CLN3-211ENST00000564091 CATP04040 527 aaKnown RBP15.99■□□□□ 0.15
CLN3-211ENST00000564091 MST1P26927 711 aa15.99■□□□□ 0.15
CLN3-211ENST00000564091 GRNP28799 593 aaKnown RBP15.99■□□□□ 0.15
CLN3-211ENST00000564091 CLCN7P51798 805 aa15.99■□□□□ 0.15
CLN3-211ENST00000564091 ADARP55265 1226 aaKnown RBP15.99■□□□□ 0.15
CLN3-211ENST00000564091 TAP2Q03519 686 aa15.99■□□□□ 0.15
CLN3-211ENST00000564091 ARHGAP19Q14CB8 494 aa15.99■□□□□ 0.15
CLN3-211ENST00000564091 TRIP13Q15645 432 aaPredicted RBP15.99■□□□□ 0.15
CLN3-211ENST00000564091 GARNL3Q5VVW2 1013 aa15.99■□□□□ 0.15
CLN3-211ENST00000564091 KIAA0930Q6ICG6 404 aaPredicted RBP15.99■□□□□ 0.15
CLN3-211ENST00000564091 HIBCHQ6NVY1 386 aaPredicted RBP15.99■□□□□ 0.15
CLN3-211ENST00000564091 NEPROQ6NW34 567 aa15.99■□□□□ 0.15
CLN3-211ENST00000564091 TMEM205Q6UW68 189 aa15.99■□□□□ 0.15
CLN3-211ENST00000564091 C4orf22Q6V702 233 aa15.99■□□□□ 0.15
CLN3-211ENST00000564091 RIPOR1Q6ZS17 1223 aa15.99■□□□□ 0.15
CLN3-211ENST00000564091 TSGA10Q9BZW7 698 aa15.99■□□□□ 0.15
CLN3-211ENST00000564091 DRC3Q9H069 523 aa15.99■□□□□ 0.15
CLN3-211ENST00000564091 IGHV3-20A0A0C4DH32 117 aa15.98■□□□□ 0.15
CLN3-211ENST00000564091 H7BY64 318 aa15.98■□□□□ 0.15
CLN3-211ENST00000564091 SMAPO00193 183 aa15.98■□□□□ 0.15
CLN3-211ENST00000564091 UNC5CO95185 931 aa15.98■□□□□ 0.15
CLN3-211ENST00000564091 CCNDBP1O95273 360 aa15.98■□□□□ 0.15
CLN3-211ENST00000564091 FGGP02679 453 aa15.98■□□□□ 0.15
CLN3-211ENST00000564091 EZRP15311 586 aaKnown RBP15.98■□□□□ 0.15
CLN3-211ENST00000564091 TPSB2P20231 275 aa15.98■□□□□ 0.15
CLN3-211ENST00000564091 OGNP20774 298 aaKnown RBP15.98■□□□□ 0.15
CLN3-211ENST00000564091 HSD17B2P37059 387 aa15.98■□□□□ 0.15
CLN3-211ENST00000564091 VPS41P49754 854 aa15.98■□□□□ 0.15
CLN3-211ENST00000564091 CUL1Q13616 776 aa15.98■□□□□ 0.15
CLN3-211ENST00000564091 TPSAB1Q15661 275 aa15.98■□□□□ 0.15
CLN3-211ENST00000564091 GAS2L3Q86XJ1 694 aa15.98■□□□□ 0.15
CLN3-211ENST00000564091 CILP2Q8IUL8 1156 aa15.98■□□□□ 0.15
CLN3-211ENST00000564091 GIMAP7Q8NHV1 300 aa15.98■□□□□ 0.15
CLN3-211ENST00000564091 DOCK10Q96BY6 2186 aa15.98■□□□□ 0.15
CLN3-211ENST00000564091 IMMP1LQ96LU5 166 aa15.98■□□□□ 0.15
CLN3-211ENST00000564091 PRAP1Q96NZ9 151 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 124.5 ms