RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 FGF5P12034 268 aa9.38□□□□□ -0.91
CLK3-208ENST00000562626 CRHR1P34998 444 aa9.38□□□□□ -0.91
CLK3-208ENST00000562626 MLLT3P42568 568 aaPredicted RBP9.38□□□□□ -0.91
CLK3-208ENST00000562626 GCGRP47871 477 aa9.38□□□□□ -0.91
CLK3-208ENST00000562626 SRSF6Q13247 344 aaKnown RBP9.38□□□□□ -0.91
CLK3-208ENST00000562626 EIF3IQ13347 325 aaKnown RBP9.38□□□□□ -0.91
CLK3-208ENST00000562626 MPP2Q14168 576 aa9.38□□□□□ -0.91
CLK3-208ENST00000562626 TSNAXIP1Q2TAA8 658 aa9.38□□□□□ -0.91
CLK3-208ENST00000562626 CDKL4Q5MAI5 379 aa9.38□□□□□ -0.91
CLK3-208ENST00000562626 PWWP2BQ6NUJ5 590 aa9.38□□□□□ -0.91
CLK3-208ENST00000562626 KLC3Q6P597 504 aa9.38□□□□□ -0.91
CLK3-208ENST00000562626 LRIG3Q6UXM1 1119 aa9.38□□□□□ -0.91
CLK3-208ENST00000562626 TIPARPQ7Z3E1 657 aaKnown RBP9.38□□□□□ -0.91
CLK3-208ENST00000562626 VN1R4Q7Z5H5 301 aa9.38□□□□□ -0.91
CLK3-208ENST00000562626 EXOC3L1Q86VI1 746 aa9.38□□□□□ -0.91
CLK3-208ENST00000562626 ZFAND4Q86XD8 727 aa9.38□□□□□ -0.91
CLK3-208ENST00000562626 CARFQ8N187 725 aa9.38□□□□□ -0.91
CLK3-208ENST00000562626 OR4K1Q8NGD4 311 aa9.38□□□□□ -0.91
CLK3-208ENST00000562626 ATL1Q8WXF7 558 aa9.38□□□□□ -0.91
CLK3-208ENST00000562626 SLC22A18Q96BI1 424 aa9.38□□□□□ -0.91
CLK3-208ENST00000562626 ARL8AQ96BM9 186 aa9.38□□□□□ -0.91
CLK3-208ENST00000562626 NXPE2Q96DL1 559 aa9.38□□□□□ -0.91
CLK3-208ENST00000562626 PHF21BQ96EK2 531 aa9.38□□□□□ -0.91
CLK3-208ENST00000562626 APOPT1Q96IL0 206 aa9.38□□□□□ -0.91
CLK3-208ENST00000562626 MACROD1Q9BQ69 325 aa9.38□□□□□ -0.91
CLK3-208ENST00000562626 MRPL57Q9BQC6 102 aaKnown RBP9.38□□□□□ -0.91
CLK3-208ENST00000562626 CD244Q9BZW8 370 aa9.38□□□□□ -0.91
CLK3-208ENST00000562626 AICDAQ9GZX7 198 aa9.38□□□□□ -0.91
CLK3-208ENST00000562626 CHRNA10Q9GZZ6 450 aa9.38□□□□□ -0.91
CLK3-208ENST00000562626 MRPL46Q9H2W6 279 aaKnown RBP9.38□□□□□ -0.91
CLK3-208ENST00000562626 CENPHQ9H3R5 247 aa9.38□□□□□ -0.91
CLK3-208ENST00000562626 AKIRIN1Q9H9L7 192 aaPredicted RBP9.38□□□□□ -0.91
CLK3-208ENST00000562626 PDE7BQ9NP56 450 aa9.38□□□□□ -0.91
CLK3-208ENST00000562626 FBXO8Q9NRD0 319 aa9.38□□□□□ -0.91
CLK3-208ENST00000562626 ZNF446Q9NWS9 450 aa9.38□□□□□ -0.91
CLK3-208ENST00000562626 AK5Q9Y6K8 562 aa9.38□□□□□ -0.91
CLK3-208ENST00000562626 DOCK10Q96BY6 2186 aa9.38□□□□□ -0.91
CLK3-208ENST00000562626 MED13Q9UHV7 2174 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 ZNF839A8K0R7 811 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 H0YGG7 62 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 E2F3O00716 465 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 OR7A17O14581 309 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 RGS16O15492 202 aaPredicted RBP9.37□□□□□ -0.91
CLK3-208ENST00000562626 TYROBPO43914 113 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 GLRA3O75311 464 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 STK16O75716 305 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 S100BP04271 92 aaPredicted RBP9.37□□□□□ -0.91
CLK3-208ENST00000562626 GSTA1P08263 222 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 RPS17P08708 135 aaKnown RBP9.37□□□□□ -0.91
CLK3-208ENST00000562626 RBP1P09455 135 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 GFAPP14136 432 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 TSPAN8P19075 237 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 EEF1DP29692 281 aaKnown RBP9.37□□□□□ -0.91
CLK3-208ENST00000562626 BCL6P41182 706 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 CCR10P46092 362 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 ARL4DP49703 201 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 HNMTP50135 292 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 ALDH18A1P54886 795 aaKnown RBP9.37□□□□□ -0.91
CLK3-208ENST00000562626 ARF3P61204 181 aaPredicted RBP9.37□□□□□ -0.91
CLK3-208ENST00000562626 CDC16Q13042 620 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 PCLAFQ15004 111 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 TGIF1Q15583 401 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 UNC50Q53HI1 259 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 CES4AQ5XG92 561 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 LCN10Q6JVE6 187 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 IGF2-ASQ6U949 168 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 ATG14Q6ZNE5 492 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 SLCO4C1Q6ZQN7 724 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 GOLGA7Q7Z5G4 137 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 ADCK2Q7Z695 626 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 TMPRSS11BQ86T26 416 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 C17orf64Q86WR6 236 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 LURAP1LQ8IV03 231 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 MCATQ8IVS2 390 aaKnown RBP9.37□□□□□ -0.91
CLK3-208ENST00000562626 SNX31Q8N9S9 440 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 ABHD11Q8NFV4 315 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 SLC5A11Q8WWX8 675 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 ZUFSPQ96AP4 578 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 TCTN2Q96GX1 697 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 ZNF285Q96NJ3 590 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 TMEM237Q96Q45 408 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 OR2A5Q96R48 311 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 TAAR9Q96RI9 348 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 TMBIM4Q9HC24 238 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 ZBTB26Q9HCK0 441 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 DNAJC11Q9NVH1 559 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 MKS1Q9NXB0 559 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 DCDC2Q9UHG0 476 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 PCTPQ9UKL6 214 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 MRPS2Q9Y399 296 aaKnown RBP9.37□□□□□ -0.91
CLK3-208ENST00000562626 PCDHGA3Q9Y5H0 932 aa9.37□□□□□ -0.91
CLK3-208ENST00000562626 GCN1Q92616 2671 aaKnown RBP9.36□□□□□ -0.91
CLK3-208ENST00000562626 PABPN1LA6NDY0 278 aaKnown RBP9.36□□□□□ -0.91
CLK3-208ENST00000562626 SYCE1LA8MT33 242 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 C4orf51C9J302 202 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 K7EPI3 171 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 COPEO14579 308 aa9.36□□□□□ -0.91
CLK3-208ENST00000562626 POLR1CO15160 346 aaPredicted RBP9.36□□□□□ -0.91
CLK3-208ENST00000562626 IPO13O94829 963 aaKnown RBP9.36□□□□□ -0.91
CLK3-208ENST00000562626 KIAA0754O94854 1291 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms