RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 C2orf42Q9NWW7 574 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 ZSCAN32Q9NX65 697 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 ARL15Q9NXU5 204 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 SIRPGQ9P1W8 387 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 XPR1Q9UBH6 696 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 SPASTQ9UBP0 616 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 EMCNQ9ULC0 261 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 SUFUQ9UMX1 484 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 INVSQ9Y283 1065 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 ASF1AQ9Y294 204 aa4.87□□□□□ -1.63
VTI1B-202ENST00000553619 ZFC3H1O60293 1989 aaKnown RBP4.86□□□□□ -1.63
VTI1B-202ENST00000553619 TDRD6O60522 2096 aaKnown RBP4.86□□□□□ -1.63
VTI1B-202ENST00000553619 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 KIR2DS5A0A0G2JLQ3 304 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 A0A0G2JNG1 304 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 NPEPPSL1A6NEC2 478 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 TMEM202A6NGA9 273 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 NCF1BA6NI72 391 aaPredicted RBP4.86□□□□□ -1.63
VTI1B-202ENST00000553619 A8MT66 165 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 PDZK1P1A8MUH7 402 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 NCF1CA8MVU1 366 aaPredicted RBP4.86□□□□□ -1.63
VTI1B-202ENST00000553619 KIR2DS3K7RE56 304 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 VILLO15195 856 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 BCAT2O15382 392 aaPredicted RBP4.86□□□□□ -1.63
VTI1B-202ENST00000553619 YKT6O15498 198 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 ZW10O43264 779 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 EDF1O60869 148 aaKnown RBP4.86□□□□□ -1.63
VTI1B-202ENST00000553619 SHOX2O60902 331 aaPredicted RBP4.86□□□□□ -1.63
VTI1B-202ENST00000553619 C1orf105O95561 183 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 GUCA1CO95843 209 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 TSPAN12O95859 305 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 FAM107AO95990 144 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 CHEK2O96017 543 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 PDGFBP01127 241 aaPredicted RBP4.86□□□□□ -1.63
VTI1B-202ENST00000553619 CSF2P04141 144 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 DBHP09172 617 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 SBK3P0C264 359 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 MSL3P1P0C860 447 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 FGF3P11487 239 aaPredicted RBP4.86□□□□□ -1.63
VTI1B-202ENST00000553619 ACP5P13686 325 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 NCF1P14598 390 aaPredicted RBP4.86□□□□□ -1.63
VTI1B-202ENST00000553619 IFNGR1P15260 489 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 XRCC1P18887 633 aaPredicted RBP4.86□□□□□ -1.63
VTI1B-202ENST00000553619 BGNP21810 368 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 TACR1P25103 407 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 PDHA2P29803 388 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 HOXD12P35452 270 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 GGT5P36269 586 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 RPL14P50914 215 aaKnown RBP4.86□□□□□ -1.63
VTI1B-202ENST00000553619 NAGLUP54802 743 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 HERVK_113P63132 956 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 MVKQ03426 396 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 RCN2Q14257 317 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 NFE2L1Q14494 772 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 KIR2DS5Q14953 304 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 HIST2H2ACQ16777 129 aaPredicted RBP4.86□□□□□ -1.63
VTI1B-202ENST00000553619 DUOXA1Q1HG43 343 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 ZNF678Q5SXM1 525 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 GKAP1Q5VSY0 366 aaPredicted RBP4.86□□□□□ -1.63
VTI1B-202ENST00000553619 TTC19Q6DKK2 380 aaPredicted RBP4.86□□□□□ -1.63
VTI1B-202ENST00000553619 HIST2H2AA3Q6FI13 130 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 CAPRIN2Q6IMN6 1127 aaKnown RBP4.86□□□□□ -1.63
VTI1B-202ENST00000553619 POMZP3Q6PJE2 187 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 IL27RAQ6UWB1 636 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 ABRAXAS1Q6UWZ7 409 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 TAF8Q7Z7C8 310 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 C11orf96Q7Z7L8 435 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 SLC9B2Q86UD5 537 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 PARGQ86W56 976 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 SYT12Q8IV01 421 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 ZNF547Q8IVP9 402 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 RBM12BQ8IXT5 1001 aaKnown RBP4.86□□□□□ -1.63
VTI1B-202ENST00000553619 LRRC34Q8IZ02 419 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 ABCA7Q8IZY2 2146 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 CLYBLQ8N0X4 340 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 DEFB119Q8N690 84 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 PTGR2Q8N8N7 351 aaPredicted RBP4.86□□□□□ -1.63
VTI1B-202ENST00000553619 PDPRQ8NCN5 879 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 OR9A1PQ8NGU1 263 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 LKAAEAR1Q8TD35 194 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 BCAS4Q8TDM0 211 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 CCT6BQ92526 530 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 EXT2Q93063 718 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 TSACCQ96A04 125 aaPredicted RBP4.86□□□□□ -1.63
VTI1B-202ENST00000553619 SH3KBP1Q96B97 665 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 PTERQ96BW5 349 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 RHBDF1Q96CC6 855 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 FBXL8Q96CD0 374 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 LOXL4Q96JB6 756 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 ZC3H10Q96K80 434 aaKnown RBP4.86□□□□□ -1.63
VTI1B-202ENST00000553619 C12orf66Q96MD2 445 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 CCT8L2Q96SF2 557 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 CCT7Q99832 543 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 HGH1Q9BTY7 390 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 MECRQ9BV79 373 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 GATA5Q9BWX5 397 aaPredicted RBP4.86□□□□□ -1.63
VTI1B-202ENST00000553619 RAB11FIP5Q9BXF6 653 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 C1QTNF3Q9BXJ4 246 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 ERVK-6Q9BXR3 956 aa4.86□□□□□ -1.63
VTI1B-202ENST00000553619 TRIM55Q9BYV6 548 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms