RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 SRSF11Q05519 484 aaKnown RBP16.03■□□□□ 0.16
VPS29-204ENST00000548259 MEP1AQ16819 746 aa16.03■□□□□ 0.16
VPS29-204ENST00000548259 MFSD4BQ5TF39 518 aa16.03■□□□□ 0.16
VPS29-204ENST00000548259 PLAG1Q6DJT9 500 aa16.03■□□□□ 0.16
VPS29-204ENST00000548259 FAM71DQ8N9W8 422 aa16.03■□□□□ 0.16
VPS29-204ENST00000548259 VKORC1Q9BQB6 163 aa16.03■□□□□ 0.16
VPS29-204ENST00000548259 KCNK13Q9HB14 408 aa16.03■□□□□ 0.16
VPS29-204ENST00000548259 MRPS30Q9NP92 439 aaKnown RBP16.03■□□□□ 0.16
VPS29-204ENST00000548259 KLHL1Q9NR64 748 aa16.03■□□□□ 0.16
VPS29-204ENST00000548259 GNPTGQ9UJJ9 305 aa16.03■□□□□ 0.16
VPS29-204ENST00000548259 NPIPA1Q9UND3 350 aa16.03■□□□□ 0.16
VPS29-204ENST00000548259 RUVBL1Q9Y265 456 aaKnown RBP16.03■□□□□ 0.16
VPS29-204ENST00000548259 NEU2Q9Y3R4 380 aa16.03■□□□□ 0.16
VPS29-204ENST00000548259 SYCE3A1L190 88 aa16.02■□□□□ 0.16
VPS29-204ENST00000548259 ZNF839A8K0R7 811 aa16.02■□□□□ 0.16
VPS29-204ENST00000548259 IQCF5A8MTL0 148 aa16.02■□□□□ 0.16
VPS29-204ENST00000548259 FFAR3O14843 346 aa16.02■□□□□ 0.16
VPS29-204ENST00000548259 GPR42O15529 346 aa16.02■□□□□ 0.16
VPS29-204ENST00000548259 ASNA1O43681 348 aa16.02■□□□□ 0.16
VPS29-204ENST00000548259 NADKO95544 446 aaPredicted RBP16.02■□□□□ 0.16
VPS29-204ENST00000548259 METTL18O95568 372 aa16.02■□□□□ 0.16
VPS29-204ENST00000548259 ADRA1DP25100 572 aa16.02■□□□□ 0.16
VPS29-204ENST00000548259 OC90Q02509 493 aaPredicted RBP16.02■□□□□ 0.16
VPS29-204ENST00000548259 TUBA3CQ13748 450 aa16.02■□□□□ 0.16
VPS29-204ENST00000548259 FAM53BQ14153 422 aa16.02■□□□□ 0.16
VPS29-204ENST00000548259 SPA17Q15506 151 aa16.02■□□□□ 0.16
VPS29-204ENST00000548259 OR1C1Q15619 314 aa16.02■□□□□ 0.16
VPS29-204ENST00000548259 EXT1Q16394 746 aa16.02■□□□□ 0.16
VPS29-204ENST00000548259 MINDY4Q4G0A6 757 aa16.02■□□□□ 0.16
VPS29-204ENST00000548259 TSTD2Q5T7W7 516 aa16.02■□□□□ 0.16
VPS29-204ENST00000548259 FBXO42Q6P3S6 717 aa16.02■□□□□ 0.16
VPS29-204ENST00000548259 LRRC8BQ6P9F7 803 aa16.02■□□□□ 0.16
VPS29-204ENST00000548259 TUBA3EQ6PEY2 450 aa16.02■□□□□ 0.16
VPS29-204ENST00000548259 PPP1R21Q6ZMI0 780 aa16.02■□□□□ 0.16
VPS29-204ENST00000548259 LRRC6Q86X45 466 aa16.02■□□□□ 0.16
VPS29-204ENST00000548259 BEST3Q8N1M1 668 aa16.02■□□□□ 0.16
VPS29-204ENST00000548259 AMER3Q8N944 861 aa16.02■□□□□ 0.16
VPS29-204ENST00000548259 OR13J1Q8NGT2 312 aa16.02■□□□□ 0.16
VPS29-204ENST00000548259 MCOLN3Q8TDD5 553 aa16.02■□□□□ 0.16
VPS29-204ENST00000548259 AGAP11Q8TF27 550 aa16.02■□□□□ 0.16
VPS29-204ENST00000548259 SMPDL3AQ92484 453 aa16.02■□□□□ 0.16
VPS29-204ENST00000548259 SDCCAG3Q96C92 435 aa16.02■□□□□ 0.16
VPS29-204ENST00000548259 PLCD4Q9BRC7 762 aa16.02■□□□□ 0.16
VPS29-204ENST00000548259 ACAT2Q9BWD1 397 aa16.02■□□□□ 0.16
VPS29-204ENST00000548259 PPT2Q9UMR5 302 aa16.02■□□□□ 0.16
VPS29-204ENST00000548259 PCNX1Q96RV3 2341 aa16.01■□□□□ 0.15
VPS29-204ENST00000548259 A0A0A6YYC8 382 aaPredicted RBP16.01■□□□□ 0.15
VPS29-204ENST00000548259 ASPDHA6ND91 283 aa16.01■□□□□ 0.15
VPS29-204ENST00000548259 I3L1I5 382 aaPredicted RBP16.01■□□□□ 0.15
VPS29-204ENST00000548259 CDK2AP1O14519 115 aa16.01■□□□□ 0.15
VPS29-204ENST00000548259 SEC24DO94855 1032 aaPredicted RBP16.01■□□□□ 0.15
VPS29-204ENST00000548259 EZRP15311 586 aaKnown RBP16.01■□□□□ 0.15
VPS29-204ENST00000548259 HSD17B2P37059 387 aa16.01■□□□□ 0.15
VPS29-204ENST00000548259 BDKRB1P46663 353 aa16.01■□□□□ 0.15
VPS29-204ENST00000548259 AGTR2P50052 363 aa16.01■□□□□ 0.15
VPS29-204ENST00000548259 ART1P52961 327 aa16.01■□□□□ 0.15
VPS29-204ENST00000548259 TAS2R50P59544 299 aa16.01■□□□□ 0.15
VPS29-204ENST00000548259 CPEB2Q7Z5Q1 589 aaKnown RBP16.01■□□□□ 0.15
VPS29-204ENST00000548259 ZC3H7AQ8IWR0 971 aaKnown RBP16.01■□□□□ 0.15
VPS29-204ENST00000548259 KRT222Q8N1A0 295 aa16.01■□□□□ 0.15
VPS29-204ENST00000548259 SLC5A8Q8N695 610 aa16.01■□□□□ 0.15
VPS29-204ENST00000548259 OR52K1Q8NGK4 314 aa16.01■□□□□ 0.15
VPS29-204ENST00000548259 PEX13Q92968 403 aa16.01■□□□□ 0.15
VPS29-204ENST00000548259 TSPAN10Q9H1Z9 355 aaPredicted RBP16.01■□□□□ 0.15
VPS29-204ENST00000548259 SLC24A3Q9HC58 644 aa16.01■□□□□ 0.15
VPS29-204ENST00000548259 FAM114A2Q9NRY5 505 aa16.01■□□□□ 0.15
VPS29-204ENST00000548259 CATSPERZQ9NTU4 200 aa16.01■□□□□ 0.15
VPS29-204ENST00000548259 E7EVH7 732 aa16■□□□□ 0.15
VPS29-204ENST00000548259 NAP1L1P55209 391 aaKnown RBP16■□□□□ 0.15
VPS29-204ENST00000548259 RELAQ04206 551 aa16■□□□□ 0.15
VPS29-204ENST00000548259 TSTA3Q13630 321 aaPredicted RBP16■□□□□ 0.15
VPS29-204ENST00000548259 PTK6Q13882 451 aa16■□□□□ 0.15
VPS29-204ENST00000548259 HKDC1Q2TB90 917 aa16■□□□□ 0.15
VPS29-204ENST00000548259 ANKRD20A4Q4UJ75 823 aa16■□□□□ 0.15
VPS29-204ENST00000548259 H3F3CQ6NXT2 135 aa16■□□□□ 0.15
VPS29-204ENST00000548259 TAB3Q8N5C8 712 aaPredicted RBP16■□□□□ 0.15
VPS29-204ENST00000548259 MDS2Q8NDY4 140 aa16■□□□□ 0.15
VPS29-204ENST00000548259 LKAAEAR1Q8TD35 194 aa16■□□□□ 0.15
VPS29-204ENST00000548259 ASB5Q8WWX0 329 aa16■□□□□ 0.15
VPS29-204ENST00000548259 FRMD6Q96NE9 622 aa16■□□□□ 0.15
VPS29-204ENST00000548259 CYTH2Q99418 400 aa16■□□□□ 0.15
VPS29-204ENST00000548259 EBNA1BP2Q99848 306 aaKnown RBP16■□□□□ 0.15
VPS29-204ENST00000548259 NFS1Q9Y697 457 aa16■□□□□ 0.15
VPS29-204ENST00000548259 A0A1W2PPV9 198 aa15.99■□□□□ 0.15
VPS29-204ENST00000548259 SOWAHDA6NJG2 315 aa15.99■□□□□ 0.15
VPS29-204ENST00000548259 AKR1B15C9JRZ8 316 aaPredicted RBP15.99■□□□□ 0.15
VPS29-204ENST00000548259 H0YIG0 161 aa15.99■□□□□ 0.15
VPS29-204ENST00000548259 PFDN6O15212 129 aa15.99■□□□□ 0.15
VPS29-204ENST00000548259 NRP2O60462 931 aa15.99■□□□□ 0.15
VPS29-204ENST00000548259 NDUFS3O75489 264 aa15.99■□□□□ 0.15
VPS29-204ENST00000548259 SNRNP200O75643 2136 aaKnown RBP15.99■□□□□ 0.15
VPS29-204ENST00000548259 CD99P14209 185 aa15.99■□□□□ 0.15
VPS29-204ENST00000548259 ZNF24P17028 368 aa15.99■□□□□ 0.15
VPS29-204ENST00000548259 CD96P40200 585 aa15.99■□□□□ 0.15
VPS29-204ENST00000548259 ACVR1Q04771 509 aa15.99■□□□□ 0.15
VPS29-204ENST00000548259 ARHGAP19Q14CB8 494 aa15.99■□□□□ 0.15
VPS29-204ENST00000548259 CDSNQ15517 529 aa15.99■□□□□ 0.15
VPS29-204ENST00000548259 MEI1Q5TIA1 1274 aa15.99■□□□□ 0.15
VPS29-204ENST00000548259 TMEM211Q6ICI0 200 aa15.99■□□□□ 0.15
VPS29-204ENST00000548259 ADCK2Q7Z695 626 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms