RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 ATP12AP54707 1039 aa7.62□□□□□ -1.19
VPS13D-211ENST00000543710 DAOAP59103 153 aa7.62□□□□□ -1.19
VPS13D-211ENST00000543710 EMX2Q04743 252 aa7.62□□□□□ -1.19
VPS13D-211ENST00000543710 PTPN20Q4JDL3 420 aa7.62□□□□□ -1.19
VPS13D-211ENST00000543710 LIPJQ5W064 366 aa7.62□□□□□ -1.19
VPS13D-211ENST00000543710 C3P1Q6ZMU1 363 aa7.62□□□□□ -1.19
VPS13D-211ENST00000543710 SLC34A3Q8N130 599 aa7.62□□□□□ -1.19
VPS13D-211ENST00000543710 OR2AJ1Q8NGZ0 328 aa7.62□□□□□ -1.19
VPS13D-211ENST00000543710 KCNE4Q8WWG9 221 aa7.62□□□□□ -1.19
VPS13D-211ENST00000543710 PRR11Q96HE9 360 aaPredicted RBP7.62□□□□□ -1.19
VPS13D-211ENST00000543710 OR52B2Q96RD2 323 aa7.62□□□□□ -1.19
VPS13D-211ENST00000543710 TRIM36Q9NQ86 728 aa7.62□□□□□ -1.19
VPS13D-211ENST00000543710 ZFP57Q9NU63 452 aa7.62□□□□□ -1.19
VPS13D-211ENST00000543710 TOR4AQ9NXH8 423 aa7.62□□□□□ -1.19
VPS13D-211ENST00000543710 STUB1Q9UNE7 303 aa7.62□□□□□ -1.19
VPS13D-211ENST00000543710 BTRCQ9Y297 605 aa7.62□□□□□ -1.19
VPS13D-211ENST00000543710 SLC27A5Q9Y2P5 690 aa7.62□□□□□ -1.19
VPS13D-211ENST00000543710 TNRC6CQ9HCJ0 1690 aaKnown RBP7.62□□□□□ -1.19
VPS13D-211ENST00000543710 TEX13CA0A0J9YWL9 993 aa7.62□□□□□ -1.19
VPS13D-211ENST00000543710 A0A1W2PPM1 405 aa7.62□□□□□ -1.19
VPS13D-211ENST00000543710 SLC38A8A6NNN8 435 aa7.62□□□□□ -1.19
VPS13D-211ENST00000543710 FFAR2O15552 330 aa7.62□□□□□ -1.19
VPS13D-211ENST00000543710 GKN3PP0CG01 181 aa7.62□□□□□ -1.19
VPS13D-211ENST00000543710 NDUFV2P19404 249 aa7.62□□□□□ -1.19
VPS13D-211ENST00000543710 FPR1P21462 350 aa7.62□□□□□ -1.19
VPS13D-211ENST00000543710 SOX9P48436 509 aa7.62□□□□□ -1.19
VPS13D-211ENST00000543710 IDH2P48735 452 aaKnown RBP7.62□□□□□ -1.19
VPS13D-211ENST00000543710 PPP2R2BQ00005 443 aa7.62□□□□□ -1.19
VPS13D-211ENST00000543710 ATG14Q6ZNE5 492 aa7.62□□□□□ -1.19
VPS13D-211ENST00000543710 TMCO2Q7Z6W1 182 aaPredicted RBP7.62□□□□□ -1.19
VPS13D-211ENST00000543710 TMEM156Q8N614 296 aa7.62□□□□□ -1.19
VPS13D-211ENST00000543710 CLEC1AQ8NC01 280 aa7.62□□□□□ -1.19
VPS13D-211ENST00000543710 OSTF1Q92882 214 aa7.62□□□□□ -1.19
VPS13D-211ENST00000543710 NACC2Q96BF6 587 aa7.62□□□□□ -1.19
VPS13D-211ENST00000543710 RNF31Q96EP0 1072 aa7.62□□□□□ -1.19
VPS13D-211ENST00000543710 NLGN3Q9NZ94 848 aa7.62□□□□□ -1.19
VPS13D-211ENST00000543710 SIRPGQ9P1W8 387 aa7.62□□□□□ -1.19
VPS13D-211ENST00000543710 IL36AQ9UHA7 158 aa7.62□□□□□ -1.19
VPS13D-211ENST00000543710 OR5K4A6NMS3 321 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 TLR4O00206 839 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 DLGAP1O14490 977 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 UGT2B4P06133 528 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 ZNF37AP17032 561 aaPredicted RBP7.61□□□□□ -1.19
VPS13D-211ENST00000543710 PVALBP20472 110 aaPredicted RBP7.61□□□□□ -1.19
VPS13D-211ENST00000543710 ARPC4P59998 168 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.61□□□□□ -1.19
VPS13D-211ENST00000543710 CARD16Q5EG05 197 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 ASTLQ6HA08 431 aaPredicted RBP7.61□□□□□ -1.19
VPS13D-211ENST00000543710 BORAQ6PGQ7 559 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 ZDHHC21Q8IVQ6 265 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 SCML4Q8N228 414 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 C2CD4AQ8NCU7 369 aaPredicted RBP7.61□□□□□ -1.19
VPS13D-211ENST00000543710 GSTCDQ8NEC7 633 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 OR4C6Q8NH72 309 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 SUN5Q8TC36 379 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 DNASE1L2Q92874 299 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 PYURFQ96I23 114 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 GPR174Q9BXC1 333 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 OR2B2Q9GZK3 357 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 SMOC2Q9H3U7 446 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 IPPKQ9H8X2 491 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 OGDHLQ9ULD0 1010 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 SH3D21A4FU49 640 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 EFCAB9A8MZ26 197 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 TNFRSF21O75509 655 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 ANXA4P09525 319 aaPredicted RBP7.61□□□□□ -1.19
VPS13D-211ENST00000543710 HOXD8P13378 290 aaPredicted RBP7.61□□□□□ -1.19
VPS13D-211ENST00000543710 KCNE1P15382 129 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 UQCRC2P22695 453 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 ITGA3P26006 1051 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 CTSOP43234 321 aaPredicted RBP7.61□□□□□ -1.19
VPS13D-211ENST00000543710 SLC9A5Q14940 896 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 GRIK5Q16478 980 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 CARTPTQ16568 116 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 SLC9B1Q4ZJI4 515 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 ANKRD54Q6NXT1 300 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 CRYBG2Q8N1P7 616 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 FAM160A2Q8N612 972 aaPredicted RBP7.61□□□□□ -1.19
VPS13D-211ENST00000543710 LRRC20Q8TCA0 184 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 DIRAS2Q96HU8 199 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 CXorf21Q9HAI6 301 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 FBXL12Q9NXK8 326 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 MAT2BQ9NZL9 334 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 KCND3Q9UK17 655 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 LYVE1Q9Y5Y7 322 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 FAM240BA0A1B0GVZ2 78 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 CYB5AP00167 134 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 GRK6P43250 576 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 ZNF829Q3KNS6 432 aaPredicted RBP7.61□□□□□ -1.19
VPS13D-211ENST00000543710 SYVN1Q86TM6 617 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 PNLDC1Q8NA58 520 aaKnown RBP7.61□□□□□ -1.19
VPS13D-211ENST00000543710 ZNF563Q8TA94 476 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 RHEBL1Q8TAI7 183 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 ADAM32Q8TC27 787 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 ADAMTS16Q8TE57 1224 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 LRIG1Q96JA1 1093 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 ZNF354BQ96LW1 612 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 UNKQ9C0B0 810 aaKnown RBP7.61□□□□□ -1.19
VPS13D-211ENST00000543710 ERVK-5Q9HDB9 667 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 NPAP1Q9NZP6 1156 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms