RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	PELI2	Q9HAT8	420 aa		9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	SH2B3	Q9UQQ2	575 aa		9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	DNAH14	Q0VDD8	3507 aa		9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	HAT1	O14929	419 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	HGS	O14964	777 aa	Predicted RBP	9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	OR1F1	O43749	312 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	DKK1	O94907	266 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	CLDN9	O95484	217 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	MLYCD	O95822	493 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	OTC	P00480	354 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	SERPINE1	P05121	402 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	EIF2S1	P05198	315 aa	Known RBP	9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	SERPIND1	P05546	499 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	ANKRD34C	P0C6C1	535 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	JMJD7	P0C870	316 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	EBLN1	P0CF75	366 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	DHRS4L1	P0CG22	281 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	NELFE	P18615	380 aa	Known RBP	9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	BGN	P21810	368 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	CCKBR	P32239	447 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	ATP1A2	P50993	1020 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	SH3BP2	P78314	561 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	CSNK1G2	P78368	415 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	ACY1	Q03154	408 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	CYP4F3	Q08477	520 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	FOXC1	Q12948	553 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	LCP2	Q13094	533 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	LAPTM5	Q13571	262 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	DOC2A	Q14183	400 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	SLBP	Q14493	270 aa	Known RBP eCLIP	9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	C16orf72	Q14CZ0	275 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	ATG9B	Q674R7	924 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	TTC19	Q6DKK2	380 aa	Predicted RBP	9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	FCRL6	Q6DN72	434 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	GPRIN3	Q6ZVF9	776 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	RAB11FIP2	Q7L804	512 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	DGLUCY	Q7Z3D6	616 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	PAQR7	Q86WK9	346 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	MARCH9	Q86YJ5	346 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	MCAT	Q8IVS2	390 aa	Known RBP	9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	TRIM42	Q8IWZ5	723 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	ARFGAP2	Q8N6H7	521 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	DCBLD1	Q8N8Z6	715 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	ABHD11	Q8NFV4	315 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	GRAMD1A	Q96CP6	724 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	PTCD3	Q96EY7	689 aa	Known RBP	9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	SLC41A2	Q96JW4	573 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	CNDP1	Q96KN2	507 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	CDK15	Q96Q40	435 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	EFCAB11	Q9BUY7	163 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	C1QTNF3	Q9BXJ4	246 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	SHCBP1L	Q9BZQ2	653 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	TWSG1	Q9GZX9	223 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	FANCE	Q9HB96	536 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	EML4	Q9HC35	981 aa	Known RBP	9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	FAM60A	Q9NP50	221 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	MID1IP1	Q9NPA3	183 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	INTS9	Q9NV88	658 aa	Known RBP	9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	ANKMY1	Q9P2S6	941 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	PLCL2	Q9UPR0	1127 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	LOXL2	Q9Y4K0	774 aa		9.75	□□□□□ -0.85
CPSF7-221	ENST00000543545	CEP250	Q9BV73	2442 aa		9.74	□□□□□ -0.85
CPSF7-221	ENST00000543545	ASXL3	Q9C0F0	2248 aa		9.74	□□□□□ -0.85
CPSF7-221	ENST00000543545	CCDC187	A0A096LP49	1063 aa		9.74	□□□□□ -0.85
CPSF7-221	ENST00000543545	IGKV1-8	A0A0C4DH67	115 aa		9.74	□□□□□ -0.85
CPSF7-221	ENST00000543545	FEZF1	A0PJY2	475 aa		9.74	□□□□□ -0.85
CPSF7-221	ENST00000543545	OR2A25	A4D2G3	310 aa		9.74	□□□□□ -0.85
CPSF7-221	ENST00000543545		H3BQF6	201 aa		9.74	□□□□□ -0.85
CPSF7-221	ENST00000543545	PPP6C	O00743	305 aa		9.74	□□□□□ -0.85
CPSF7-221	ENST00000543545	OR7A17	O14581	309 aa		9.74	□□□□□ -0.85
CPSF7-221	ENST00000543545	NRP2	O60462	931 aa		9.74	□□□□□ -0.85
CPSF7-221	ENST00000543545	CTSV	O60911	334 aa		9.74	□□□□□ -0.85
CPSF7-221	ENST00000543545	FGF3	P11487	239 aa	Predicted RBP	9.74	□□□□□ -0.85
CPSF7-221	ENST00000543545	PCNA	P12004	261 aa		9.74	□□□□□ -0.85
CPSF7-221	ENST00000543545	CCL4	P13236	92 aa		9.74	□□□□□ -0.85
CPSF7-221	ENST00000543545	EZR	P15311	586 aa	Known RBP	9.74	□□□□□ -0.85
CPSF7-221	ENST00000543545	FOLR1	P15328	257 aa		9.74	□□□□□ -0.85
CPSF7-221	ENST00000543545	EPOR	P19235	508 aa		9.74	□□□□□ -0.85
CPSF7-221	ENST00000543545	CCR10	P46092	362 aa		9.74	□□□□□ -0.85
CPSF7-221	ENST00000543545	PDX1	P52945	283 aa		9.74	□□□□□ -0.85
CPSF7-221	ENST00000543545	MAPK10	P53779	464 aa		9.74	□□□□□ -0.85
CPSF7-221	ENST00000543545	RPS15A	P62244	130 aa	Known RBP	9.74	□□□□□ -0.85
CPSF7-221	ENST00000543545	STX3	Q13277	289 aa		9.74	□□□□□ -0.85
CPSF7-221	ENST00000543545	TUBB3	Q13509	450 aa		9.74	□□□□□ -0.85
CPSF7-221	ENST00000543545	GPR19	Q15760	415 aa		9.74	□□□□□ -0.85
CPSF7-221	ENST00000543545	TBCC	Q15814	346 aa		9.74	□□□□□ -0.85
CPSF7-221	ENST00000543545	CPSF6	Q16630	551 aa	Known RBP eCLIP	9.74	□□□□□ -0.85
CPSF7-221	ENST00000543545	DEFB110	Q30KQ9	67 aa		9.74	□□□□□ -0.85
CPSF7-221	ENST00000543545	LIPJ	Q5W064	366 aa		9.74	□□□□□ -0.85
CPSF7-221	ENST00000543545	ATG16L1	Q676U5	607 aa		9.74	□□□□□ -0.85
CPSF7-221	ENST00000543545	ZNF425	Q6IV72	752 aa		9.74	□□□□□ -0.85
CPSF7-221	ENST00000543545	FBXO42	Q6P3S6	717 aa		9.74	□□□□□ -0.85
CPSF7-221	ENST00000543545	TMPRSS7	Q7RTY8	843 aa		9.74	□□□□□ -0.85
CPSF7-221	ENST00000543545	D2HGDH	Q8N465	521 aa		9.74	□□□□□ -0.85
CPSF7-221	ENST00000543545	OR52B6	Q8NGF0	335 aa		9.74	□□□□□ -0.85
CPSF7-221	ENST00000543545	FAM76A	Q8TAV0	307 aa		9.74	□□□□□ -0.85
CPSF7-221	ENST00000543545	CCT6B	Q92526	530 aa		9.74	□□□□□ -0.85
CPSF7-221	ENST00000543545	UBE2E3	Q969T4	207 aa		9.74	□□□□□ -0.85
CPSF7-221	ENST00000543545	RERG	Q96A58	199 aa	Predicted RBP	9.74	□□□□□ -0.85
CPSF7-221	ENST00000543545	FCRL4	Q96PJ5	515 aa		9.74	□□□□□ -0.85

Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms