RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 RBM4BQ9BQ04 359 aaKnown RBP16.64■□□□□ 0.25
SPIDR-227ENST00000541342 RIOK2Q9BVS4 552 aaKnown RBP16.64■□□□□ 0.25
SPIDR-227ENST00000541342 RBM4Q9BWF3 364 aaKnown RBP16.64■□□□□ 0.25
SPIDR-227ENST00000541342 FAM126AQ9BYI3 521 aaPredicted RBP16.64■□□□□ 0.25
SPIDR-227ENST00000541342 TRBV5-3A0A0A0MS03 114 aa16.64■□□□□ 0.25
SPIDR-227ENST00000541342 CXCR6O00574 342 aa16.64■□□□□ 0.25
SPIDR-227ENST00000541342 UGT2B11O75310 529 aa16.64■□□□□ 0.25
SPIDR-227ENST00000541342 SLC2A4P14672 509 aa16.64■□□□□ 0.25
SPIDR-227ENST00000541342 ITIH1P19827 911 aa16.64■□□□□ 0.25
SPIDR-227ENST00000541342 PON2Q15165 354 aa16.64■□□□□ 0.25
SPIDR-227ENST00000541342 SERPINA13PQ6UXR4 307 aa16.64■□□□□ 0.25
SPIDR-227ENST00000541342 TECPR1Q7Z6L1 1165 aa16.64■□□□□ 0.25
SPIDR-227ENST00000541342 SVOPLQ8N434 492 aa16.64■□□□□ 0.25
SPIDR-227ENST00000541342 AADATQ8N5Z0 425 aa16.64■□□□□ 0.25
SPIDR-227ENST00000541342 ALPK1Q96QP1 1244 aa16.64■□□□□ 0.25
SPIDR-227ENST00000541342 AKIP1Q9NQ31 210 aa16.64■□□□□ 0.25
SPIDR-227ENST00000541342 OBP2AQ9NY56 170 aa16.64■□□□□ 0.25
SPIDR-227ENST00000541342 VNN3Q9NY84 501 aa16.64■□□□□ 0.25
SPIDR-227ENST00000541342 PCDHGA4Q9Y5G9 962 aa16.64■□□□□ 0.25
SPIDR-227ENST00000541342 KPNA3O00505 521 aaPredicted RBP16.63■□□□□ 0.25
SPIDR-227ENST00000541342 XPNPEP2O43895 674 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 MAN1A2O60476 641 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 ATP1B2P14415 290 aaPredicted RBP16.63■□□□□ 0.25
SPIDR-227ENST00000541342 FUT4P22083 530 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 CDH3P22223 829 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 HMGCS1Q01581 520 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 HYAL1Q12794 435 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 ZNF648Q5T619 568 aaPredicted RBP16.63■□□□□ 0.25
SPIDR-227ENST00000541342 ANKRD13BQ86YJ7 626 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 PARP8Q8N3A8 854 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 ZNF555Q8NEP9 628 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 CNIH3Q8TBE1 160 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 SDCCAG3Q96C92 435 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 CHFRQ96EP1 664 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 ZDHHC4Q9NPG8 344 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 DCAF13Q9NV06 445 aaKnown RBP16.63■□□□□ 0.25
SPIDR-227ENST00000541342 KCTD5Q9NXV2 234 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.63■□□□□ 0.25
SPIDR-227ENST00000541342 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.63■□□□□ 0.25
SPIDR-227ENST00000541342 ELOVL7A1L3X0 281 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 PTGES3LE9PB15 166 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 FFAR3O14843 346 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 GSTA4O15217 222 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 RAD51BO15315 384 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 GPR42O15529 346 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 SGTAO43765 313 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 XPAP23025 273 aaPredicted RBP16.63■□□□□ 0.25
SPIDR-227ENST00000541342 ACVR2AP27037 513 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 AOAHP28039 575 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 CD6P30203 668 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 HSPA7P48741 367 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 IFITM3Q01628 133 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 ZNF234Q14588 700 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 OXA1LQ15070 435 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 HNRNPA1L2Q32P51 320 aaKnown RBP16.63■□□□□ 0.25
SPIDR-227ENST00000541342 LAIR1Q6GTX8 287 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 SUSD1Q6UWL2 747 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 LIPIQ6XZB0 460 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 SNX29P2Q8IUI4 249 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 OR52E4Q8NGH9 312 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 OR10Q1Q8NGQ4 319 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 FAR1Q8WVX9 515 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 NIPSNAP3AQ9UFN0 247 aaPredicted RBP16.63■□□□□ 0.25
SPIDR-227ENST00000541342 U3KQV3 271 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 HS6ST1O60243 411 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 OPRD1P41143 372 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 GDF5P43026 501 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 GZMMP51124 257 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 PHC1P78364 1004 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 EMX1Q04741 257 aaPredicted RBP16.63■□□□□ 0.25
SPIDR-227ENST00000541342 RUNDC3AQ59EK9 446 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 MBOAT1Q6ZNC8 495 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 NODALQ96S42 347 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 ALOXE3Q9BYJ1 711 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 KAT8Q9H7Z6 458 aaKnown RBP16.63■□□□□ 0.25
SPIDR-227ENST00000541342 SLC28A3Q9HAS3 691 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 MSRAQ9UJ68 235 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 HCN2Q9UL51 889 aa16.63■□□□□ 0.25
SPIDR-227ENST00000541342 PLK4O00444 970 aa16.62■□□□□ 0.25
SPIDR-227ENST00000541342 PGRP06401 933 aa16.62■□□□□ 0.25
SPIDR-227ENST00000541342 OR56A5P0C7T3 313 aa16.62■□□□□ 0.25
SPIDR-227ENST00000541342 AKT1P31749 480 aa16.62■□□□□ 0.25
SPIDR-227ENST00000541342 FCHO2Q0JRZ9 810 aa16.62■□□□□ 0.25
SPIDR-227ENST00000541342 GBX1Q14549 363 aa16.62■□□□□ 0.25
SPIDR-227ENST00000541342 PDGFRLQ15198 375 aa16.62■□□□□ 0.25
SPIDR-227ENST00000541342 MAPKAPK3Q16644 382 aa16.62■□□□□ 0.25
SPIDR-227ENST00000541342 TTLL9Q3SXZ7 439 aa16.62■□□□□ 0.25
SPIDR-227ENST00000541342 DCP2Q8IU60 420 aaKnown RBP16.62■□□□□ 0.25
SPIDR-227ENST00000541342 VRK3Q8IV63 474 aa16.62■□□□□ 0.25
SPIDR-227ENST00000541342 TMCO5AQ8N6Q1 288 aa16.62■□□□□ 0.25
SPIDR-227ENST00000541342 NETO1Q8TDF5 533 aa16.62■□□□□ 0.25
SPIDR-227ENST00000541342 ARRDC3Q96B67 414 aa16.62■□□□□ 0.25
SPIDR-227ENST00000541342 MRPL38Q96DV4 380 aaKnown RBP16.62■□□□□ 0.25
SPIDR-227ENST00000541342 BARD1Q99728 777 aaKnown RBP16.62■□□□□ 0.25
SPIDR-227ENST00000541342 TMEM245Q9H330 911 aa16.62■□□□□ 0.25
SPIDR-227ENST00000541342 TMEM165Q9HC07 324 aa16.62■□□□□ 0.25
SPIDR-227ENST00000541342 ZFP14Q9HCL3 533 aa16.62■□□□□ 0.25
SPIDR-227ENST00000541342 THG1LQ9NWX6 298 aaKnown RBP16.62■□□□□ 0.25
SPIDR-227ENST00000541342 AASSQ9UDR5 926 aa16.62■□□□□ 0.25
SPIDR-227ENST00000541342 NUP214P35658 2090 aaPredicted RBP16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms