RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 TMEM178AQ8NBL3 297 aa11□□□□□ -0.65
CLSTN3-209ENST00000539982 LKAAEAR1Q8TD35 194 aa11□□□□□ -0.65
CLSTN3-209ENST00000539982 FRMD6Q96NE9 622 aa11□□□□□ -0.65
CLSTN3-209ENST00000539982 CYTH2Q99418 400 aa11□□□□□ -0.65
CLSTN3-209ENST00000539982 DPH7Q9BTV6 452 aa11□□□□□ -0.65
CLSTN3-209ENST00000539982 HES7Q9BYE0 225 aa11□□□□□ -0.65
CLSTN3-209ENST00000539982 GOLPH3Q9H4A6 298 aa11□□□□□ -0.65
CLSTN3-209ENST00000539982 LRRC40Q9H9A6 602 aa11□□□□□ -0.65
CLSTN3-209ENST00000539982 NHEJ1Q9H9Q4 299 aaPredicted RBP11□□□□□ -0.65
CLSTN3-209ENST00000539982 PIH1D1Q9NWS0 290 aaKnown RBP11□□□□□ -0.65
CLSTN3-209ENST00000539982 IFNKQ9P0W0 207 aa11□□□□□ -0.65
CLSTN3-209ENST00000539982 TTC7AQ9ULT0 858 aaPredicted RBP11□□□□□ -0.65
CLSTN3-209ENST00000539982 PPT2Q9UMR5 302 aa11□□□□□ -0.65
CLSTN3-209ENST00000539982 RUVBL1Q9Y265 456 aaKnown RBP11□□□□□ -0.65
CLSTN3-209ENST00000539982 ASB1Q9Y576 335 aa11□□□□□ -0.65
CLSTN3-209ENST00000539982 SCN2AQ99250 2005 aa10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 A0A0A6YYC8 382 aaPredicted RBP10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 I3L1I5 382 aaPredicted RBP10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 PSMD3O43242 534 aa10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 ZNHIT1O43257 154 aa10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 FOXS1O43638 330 aa10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 VPS26AO75436 327 aa10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 ZNF189O75820 626 aaPredicted RBP10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 SEC24DO94855 1032 aaPredicted RBP10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 C1orf105O95561 183 aa10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 METTL18O95568 372 aa10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 SP1P08047 785 aa10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 CMPK1P30085 196 aa10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 PPARGP37231 505 aaPredicted RBP10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 IST1P53990 364 aa10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 HSF1Q00613 529 aa10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 FASTKQ14296 549 aaKnown RBP10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 TMED2Q15363 201 aa10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 SYT16Q17RD7 645 aa10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 HKDC1Q2TB90 917 aa10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 CCSMST1Q4G0I0 132 aa10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 GALNTL5Q7Z4T8 443 aa10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 PNPLA5Q7Z6Z6 429 aaPredicted RBP10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 TGIF2LYQ8IUE0 185 aa10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 CRLF3Q8IUI8 442 aa10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 KRT222Q8N1A0 295 aa10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 ARHGEF39Q8N4T4 335 aa10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 HORMAD2Q8N7B1 307 aa10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 FAM98AQ8NCA5 519 aaKnown RBP10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 OR13J1Q8NGT2 312 aa10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 OR4L1Q8NH43 312 aa10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 GSDMBQ8TAX9 411 aa10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 KRT35Q92764 455 aa10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 HDAC10Q969S8 669 aa10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 FOXC2Q99958 501 aa10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 FAM118BQ9BPY3 351 aa10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 CXXC4Q9H2H0 198 aa10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 KCNK13Q9HB14 408 aa10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 ANKRD10Q9NXR5 420 aa10.99□□□□□ -0.65
CLSTN3-209ENST00000539982 IGHV3-20A0A0C4DH32 117 aa10.98□□□□□ -0.65
CLSTN3-209ENST00000539982 MACROD2A1Z1Q3 448 aa10.98□□□□□ -0.65
CLSTN3-209ENST00000539982 SOWAHDA6NJG2 315 aa10.98□□□□□ -0.65
CLSTN3-209ENST00000539982 TXNDC9O14530 226 aa10.98□□□□□ -0.65
CLSTN3-209ENST00000539982 SUN1O94901 812 aa10.98□□□□□ -0.65
CLSTN3-209ENST00000539982 GOT2P00505 430 aaKnown RBP10.98□□□□□ -0.65
CLSTN3-209ENST00000539982 CYC1P08574 325 aa10.98□□□□□ -0.65
CLSTN3-209ENST00000539982 CCNFP41002 786 aa10.98□□□□□ -0.65
CLSTN3-209ENST00000539982 MAT1AQ00266 395 aaKnown RBP10.98□□□□□ -0.65
CLSTN3-209ENST00000539982 FAM53BQ14153 422 aa10.98□□□□□ -0.65
CLSTN3-209ENST00000539982 CCDC38Q502W7 563 aa10.98□□□□□ -0.65
CLSTN3-209ENST00000539982 CES4AQ5XG92 561 aa10.98□□□□□ -0.65
CLSTN3-209ENST00000539982 SLC25A25Q6KCM7 469 aa10.98□□□□□ -0.65
CLSTN3-209ENST00000539982 AFTPHQ6ULP2 937 aa10.98□□□□□ -0.65
CLSTN3-209ENST00000539982 FGD2Q7Z6J4 655 aa10.98□□□□□ -0.65
CLSTN3-209ENST00000539982 PAQR7Q86WK9 346 aa10.98□□□□□ -0.65
CLSTN3-209ENST00000539982 CHDHQ8NE62 594 aaPredicted RBP10.98□□□□□ -0.65
CLSTN3-209ENST00000539982 LILRB4Q8NHJ6 448 aa10.98□□□□□ -0.65
CLSTN3-209ENST00000539982 M1APQ8TC57 530 aa10.98□□□□□ -0.65
CLSTN3-209ENST00000539982 MAGEC3Q8TD91 643 aa10.98□□□□□ -0.65
CLSTN3-209ENST00000539982 ASB5Q8WWX0 329 aa10.98□□□□□ -0.65
CLSTN3-209ENST00000539982 MRFAP1L1Q96HT8 127 aa10.98□□□□□ -0.65
CLSTN3-209ENST00000539982 OR2A5Q96R48 311 aa10.98□□□□□ -0.65
CLSTN3-209ENST00000539982 NPAS2Q99743 824 aa10.98□□□□□ -0.65
CLSTN3-209ENST00000539982 ZNF559Q9BR84 538 aa10.98□□□□□ -0.65
CLSTN3-209ENST00000539982 PLCD4Q9BRC7 762 aa10.98□□□□□ -0.65
CLSTN3-209ENST00000539982 OSBPL8Q9BZF1 889 aa10.98□□□□□ -0.65
CLSTN3-209ENST00000539982 VN1R1Q9GZP7 353 aa10.98□□□□□ -0.65
CLSTN3-209ENST00000539982 DRC3Q9H069 523 aa10.98□□□□□ -0.65
CLSTN3-209ENST00000539982 SYNPO2LQ9H987 977 aa10.98□□□□□ -0.65
CLSTN3-209ENST00000539982 SPATA7Q9P0W8 599 aa10.98□□□□□ -0.65
CLSTN3-209ENST00000539982 C19orf25Q9UFG5 118 aaPredicted RBP10.98□□□□□ -0.65
CLSTN3-209ENST00000539982 NFS1Q9Y697 457 aa10.98□□□□□ -0.65
CLSTN3-209ENST00000539982 PRRC2AP48634 2157 aaKnown RBP10.98□□□□□ -0.65
CLSTN3-209ENST00000539982 KRT87PA6NCN2 255 aa10.97□□□□□ -0.65
CLSTN3-209ENST00000539982 GOLGA6L19H0YKK7 550 aa10.97□□□□□ -0.65
CLSTN3-209ENST00000539982 CDK2AP1O14519 115 aa10.97□□□□□ -0.65
CLSTN3-209ENST00000539982 KPNA5O15131 536 aa10.97□□□□□ -0.65
CLSTN3-209ENST00000539982 PJA2O43164 708 aa10.97□□□□□ -0.65
CLSTN3-209ENST00000539982 NEURL1O76050 574 aa10.97□□□□□ -0.65
CLSTN3-209ENST00000539982 PKMP14618 531 aaKnown RBP10.97□□□□□ -0.65
CLSTN3-209ENST00000539982 KLK2P20151 261 aa10.97□□□□□ -0.65
CLSTN3-209ENST00000539982 PTPN7P35236 360 aa10.97□□□□□ -0.65
CLSTN3-209ENST00000539982 BDKRB1P46663 353 aa10.97□□□□□ -0.65
CLSTN3-209ENST00000539982 AVPR1BP47901 424 aa10.97□□□□□ -0.65
CLSTN3-209ENST00000539982 ST13P50502 369 aaKnown RBP10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms