RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 RFXAPO00287 272 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 DLGAP1O14490 977 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 GGT1P19440 569 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 CDH3P22223 829 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 METAP1P53582 386 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 GAREM2Q75VX8 874 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 GPR65Q8IYL9 337 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 ZNF614Q8N883 585 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 TOP1MTQ969P6 601 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 TAMM41Q96BW9 452 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 DUSP26Q9BV47 211 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 CHCHD3Q9NX63 227 aaKnown RBP13.04□□□□□ -0.32
GPC1-209ENST00000495100 THUMPD1Q9NXG2 353 aaKnown RBP13.04□□□□□ -0.32
GPC1-209ENST00000495100 CXXC1Q9P0U4 656 aaPredicted RBP13.04□□□□□ -0.32
GPC1-209ENST00000495100 CAB39Q9Y376 341 aaPredicted RBP13.04□□□□□ -0.32
GPC1-209ENST00000495100 H3BM21 787 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 BCAS1O75363 584 aaPredicted RBP13.04□□□□□ -0.32
GPC1-209ENST00000495100 MATN4O95460 622 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 C6orf47O95873 294 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 GPR1P46091 355 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 DOC2AQ14183 400 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 PDCD4Q53EL6 469 aaKnown RBP13.04□□□□□ -0.32
GPC1-209ENST00000495100 EGFL6Q8IUX8 553 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 OR9Q2Q8NGE9 314 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 MCFD2Q8NI22 146 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 ZFP90Q8TF47 636 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 DYRK4Q9NR20 520 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 HCFC2Q9Y5Z7 792 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 CHD7Q9P2D1 2997 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 PCM1Q15154 2024 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 WASHC1A8K0Z3 465 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 MMP20O60882 483 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 SLC10A3P09131 477 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 CKMT1AP12532 417 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 TYRP14679 529 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 HTR1EP28566 365 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 CSNK1DP48730 415 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 MLLT10P55197 1068 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 CAMK2GQ13555 558 aaPredicted RBP13.04□□□□□ -0.32
GPC1-209ENST00000495100 FNDC3BQ53EP0 1204 aaKnown RBP13.04□□□□□ -0.32
GPC1-209ENST00000495100 TTC23LQ6PF05 361 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 WASH2PQ6VEQ5 465 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 ZNF554Q86TJ5 538 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 SPARTQ8N0X7 666 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 NAGSQ8N159 534 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 DRAXINQ8NBI3 349 aaPredicted RBP13.04□□□□□ -0.32
GPC1-209ENST00000495100 PYURFQ96I23 114 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 CDK5RAP1Q96SZ6 601 aaKnown RBP13.04□□□□□ -0.32
GPC1-209ENST00000495100 NTN4Q9HB63 628 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 MTRRQ9UBK8 725 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 KLHL20Q9Y2M5 609 aa13.04□□□□□ -0.32
GPC1-209ENST00000495100 LEFTY2O00292 366 aa13.03□□□□□ -0.32
GPC1-209ENST00000495100 SLC1A7O00341 560 aa13.03□□□□□ -0.32
GPC1-209ENST00000495100 SERPINI2O75830 405 aa13.03□□□□□ -0.32
GPC1-209ENST00000495100 CATP04040 527 aaKnown RBP13.03□□□□□ -0.32
GPC1-209ENST00000495100 ALPLP05186 524 aa13.03□□□□□ -0.32
GPC1-209ENST00000495100 HTR1BP28222 390 aa13.03□□□□□ -0.32
GPC1-209ENST00000495100 SERPINB10P48595 397 aa13.03□□□□□ -0.32
GPC1-209ENST00000495100 AP1S1P61966 158 aa13.03□□□□□ -0.32
GPC1-209ENST00000495100 GALNT1Q10472 559 aaPredicted RBP13.03□□□□□ -0.32
GPC1-209ENST00000495100 INTS11Q5TA45 600 aaKnown RBP13.03□□□□□ -0.32
GPC1-209ENST00000495100 OR2T5Q6IEZ7 315 aa13.03□□□□□ -0.32
GPC1-209ENST00000495100 ZNF773Q6PK81 442 aa13.03□□□□□ -0.32
GPC1-209ENST00000495100 AGTRAPQ6RW13 159 aa13.03□□□□□ -0.32
GPC1-209ENST00000495100 TRIM73Q86UV7 250 aa13.03□□□□□ -0.32
GPC1-209ENST00000495100 OR2T29Q8NH02 315 aa13.03□□□□□ -0.32
GPC1-209ENST00000495100 ASZ1Q8WWH4 475 aa13.03□□□□□ -0.32
GPC1-209ENST00000495100 PLD4Q96BZ4 506 aa13.03□□□□□ -0.32
GPC1-209ENST00000495100 RHBGQ9H310 441 aa13.03□□□□□ -0.32
GPC1-209ENST00000495100 ABCB9Q9NP78 766 aa13.03□□□□□ -0.32
GPC1-209ENST00000495100 VPS29Q9UBQ0 182 aa13.03□□□□□ -0.32
GPC1-209ENST00000495100 MALT1Q9UDY8 824 aa13.03□□□□□ -0.32
GPC1-209ENST00000495100 IL20RAQ9UHF4 553 aa13.03□□□□□ -0.32
GPC1-209ENST00000495100 INTS6Q9UL03 887 aaKnown RBP13.03□□□□□ -0.32
GPC1-209ENST00000495100 PAIP2BQ9ULR5 123 aaKnown RBP13.03□□□□□ -0.32
GPC1-209ENST00000495100 BTBD3Q9Y2F9 522 aa13.03□□□□□ -0.32
GPC1-209ENST00000495100 TBC1D3BA6NDS4 549 aa13.03□□□□□ -0.32
GPC1-209ENST00000495100 PDZK1P1A8MUH7 402 aa13.03□□□□□ -0.32
GPC1-209ENST00000495100 TNFRSF11BO00300 401 aa13.03□□□□□ -0.32
GPC1-209ENST00000495100 CD160O95971 181 aa13.03□□□□□ -0.32
GPC1-209ENST00000495100 C8orf89P0DMQ9 161 aa13.03□□□□□ -0.32
GPC1-209ENST00000495100 SRCP12931 536 aa13.03□□□□□ -0.32
GPC1-209ENST00000495100 HSD11B1LQ7Z5J1 315 aa13.03□□□□□ -0.32
GPC1-209ENST00000495100 P2RY8Q86VZ1 359 aa13.03□□□□□ -0.32
GPC1-209ENST00000495100 THOC6Q86W42 341 aaKnown RBP13.03□□□□□ -0.32
GPC1-209ENST00000495100 NFKBIDQ8NI38 313 aa13.03□□□□□ -0.32
GPC1-209ENST00000495100 BORCS5Q969J3 196 aa13.03□□□□□ -0.32
GPC1-209ENST00000495100 RBM38Q9H0Z9 239 aaKnown RBP13.03□□□□□ -0.32
GPC1-209ENST00000495100 TPRKBQ9Y3C4 175 aa13.03□□□□□ -0.32
GPC1-209ENST00000495100 SCN2AQ99250 2005 aa13.03□□□□□ -0.32
GPC1-209ENST00000495100 HOXA2O43364 376 aa13.02□□□□□ -0.32
GPC1-209ENST00000495100 OR10H3O60404 316 aa13.02□□□□□ -0.32
GPC1-209ENST00000495100 UMPSP11172 480 aa13.02□□□□□ -0.32
GPC1-209ENST00000495100 SERPINB1P30740 379 aa13.02□□□□□ -0.32
GPC1-209ENST00000495100 SLBPQ14493 270 aaKnown RBP eCLIP13.02□□□□□ -0.32
GPC1-209ENST00000495100 TBC1D25Q3MII6 688 aa13.02□□□□□ -0.32
GPC1-209ENST00000495100 C22orf39Q6P5X5 142 aa13.02□□□□□ -0.32
GPC1-209ENST00000495100 ZNF852Q6ZMS4 543 aa13.02□□□□□ -0.32
GPC1-209ENST00000495100 BCDIN3DQ7Z5W3 292 aaKnown RBP13.02□□□□□ -0.32
GPC1-209ENST00000495100 FAM124AQ86V42 546 aa13.02□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms