RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 EFTUD2Q15029 972 aaKnown RBP eCLIP17.3■□□□□ 0.363e-7■□□□□ 10.5
COL9A3-214ENST00000490398 SHISA6Q6ZSJ9 500 aa17.3■□□□□ 0.36
COL9A3-214ENST00000490398 ZNF605Q86T29 641 aa17.3■□□□□ 0.36
COL9A3-214ENST00000490398 ARHGEF39Q8N4T4 335 aa17.3■□□□□ 0.36
COL9A3-214ENST00000490398 TTC29Q8NA56 475 aaPredicted RBP17.3■□□□□ 0.36
COL9A3-214ENST00000490398 C9orf43Q8TAL5 461 aaPredicted RBP17.3■□□□□ 0.36
COL9A3-214ENST00000490398 THAP4Q8WY91 577 aa17.3■□□□□ 0.36
COL9A3-214ENST00000490398 SEC14L1Q92503 715 aa17.3■□□□□ 0.36
COL9A3-214ENST00000490398 PDLIM5Q96HC4 596 aaKnown RBP17.3■□□□□ 0.36
COL9A3-214ENST00000490398 OR4K3Q96R72 315 aa17.3■□□□□ 0.36
COL9A3-214ENST00000490398 MACROD1Q9BQ69 325 aa17.3■□□□□ 0.36
COL9A3-214ENST00000490398 ANKMY1Q9P2S6 941 aa17.3■□□□□ 0.36
COL9A3-214ENST00000490398 CTSFQ9UBX1 484 aa17.3■□□□□ 0.36
COL9A3-214ENST00000490398 GPN3Q9UHW5 284 aaPredicted RBP17.3■□□□□ 0.36
COL9A3-214ENST00000490398 RUVBL1Q9Y265 456 aaKnown RBP17.3■□□□□ 0.36
COL9A3-214ENST00000490398 TP53TG5Q9Y2B4 290 aa17.3■□□□□ 0.36
COL9A3-214ENST00000490398 MRPS2Q9Y399 296 aaKnown RBP17.3■□□□□ 0.36
COL9A3-214ENST00000490398 FFAR3O14843 346 aa17.29■□□□□ 0.36
COL9A3-214ENST00000490398 GPR42O15529 346 aa17.29■□□□□ 0.36
COL9A3-214ENST00000490398 PHGDHO43175 533 aaKnown RBP17.29■□□□□ 0.36
COL9A3-214ENST00000490398 CCNDBP1O95273 360 aa17.29■□□□□ 0.36
COL9A3-214ENST00000490398 NPPBP16860 134 aa17.29■□□□□ 0.36
COL9A3-214ENST00000490398 CSNK1G2P78368 415 aa17.29■□□□□ 0.36
COL9A3-214ENST00000490398 NKG7Q16617 165 aa17.29■□□□□ 0.36
COL9A3-214ENST00000490398 C18orf21Q32NC0 220 aaPredicted RBP17.29■□□□□ 0.36
COL9A3-214ENST00000490398 KBTBD12Q3ZCT8 623 aa17.29■□□□□ 0.36
COL9A3-214ENST00000490398 OVCH1Q7RTY7 1134 aa17.29■□□□□ 0.36
COL9A3-214ENST00000490398 VN1R4Q7Z5H5 301 aa17.29■□□□□ 0.36
COL9A3-214ENST00000490398 PPP1R32Q7Z5V6 425 aa17.29■□□□□ 0.36
COL9A3-214ENST00000490398 APLFQ8IW19 511 aaPredicted RBP17.29■□□□□ 0.36
COL9A3-214ENST00000490398 MMGT1Q8N4V1 131 aa17.29■□□□□ 0.36
COL9A3-214ENST00000490398 CSNK1A1LQ8N752 337 aa17.29■□□□□ 0.36
COL9A3-214ENST00000490398 FBF1Q8TES7 1133 aa17.29■□□□□ 0.36
COL9A3-214ENST00000490398 DHRS4Q9BTZ2 278 aa17.29■□□□□ 0.36
COL9A3-214ENST00000490398 FAM117AQ9C073 453 aa17.29■□□□□ 0.36
COL9A3-214ENST00000490398 ARL15Q9NXU5 204 aa17.29■□□□□ 0.36
COL9A3-214ENST00000490398 TUBD1Q9UJT1 453 aa17.29■□□□□ 0.36
COL9A3-214ENST00000490398 SPTA1P02549 2419 aa17.29■□□□□ 0.36
COL9A3-214ENST00000490398 BAHCC1Q9P281 2608 aa17.29■□□□□ 0.36
COL9A3-214ENST00000490398 FEZF1A0PJY2 475 aa17.28■□□□□ 0.36
COL9A3-214ENST00000490398 LCMT2O60294 686 aaKnown RBP17.28■□□□□ 0.36
COL9A3-214ENST00000490398 RFPL1O75677 317 aa17.28■□□□□ 0.36
COL9A3-214ENST00000490398 SFTPCP11686 197 aa17.28■□□□□ 0.36
COL9A3-214ENST00000490398 CDH1P12830 882 aa17.28■□□□□ 0.36
COL9A3-214ENST00000490398 EZRP15311 586 aaKnown RBP17.28■□□□□ 0.36
COL9A3-214ENST00000490398 CCL11P51671 97 aa17.28■□□□□ 0.36
COL9A3-214ENST00000490398 TSNQ15631 228 aaKnown RBP17.28■□□□□ 0.36
COL9A3-214ENST00000490398 YOD1Q5VVQ6 348 aaPredicted RBP17.28■□□□□ 0.36
COL9A3-214ENST00000490398 CYS1Q717R9 158 aa17.28■□□□□ 0.36
COL9A3-214ENST00000490398 MRGPREQ86SM8 312 aa17.28■□□□□ 0.36
COL9A3-214ENST00000490398 CTAGE3PQ8IX95 158 aa17.28■□□□□ 0.36
COL9A3-214ENST00000490398 PPM1NQ8N819 430 aa17.28■□□□□ 0.36
COL9A3-214ENST00000490398 OR2Y1Q8NGV0 311 aa17.28■□□□□ 0.36
COL9A3-214ENST00000490398 OR56A3Q8NH54 315 aa17.28■□□□□ 0.36
COL9A3-214ENST00000490398 SPSB2Q99619 263 aa17.28■□□□□ 0.36
COL9A3-214ENST00000490398 RBBP8Q99708 897 aa17.28■□□□□ 0.36
COL9A3-214ENST00000490398 PHACTR1Q9C0D0 580 aa17.28■□□□□ 0.36
COL9A3-214ENST00000490398 ING2Q9H160 280 aa17.28■□□□□ 0.36
COL9A3-214ENST00000490398 SOX17Q9H6I2 414 aaPredicted RBP17.28■□□□□ 0.36
COL9A3-214ENST00000490398 GPAMQ9HCL2 828 aa17.28■□□□□ 0.36
COL9A3-214ENST00000490398 NSMCE4AQ9NXX6 385 aa17.28■□□□□ 0.36
COL9A3-214ENST00000490398 FOXS1O43638 330 aa17.27■□□□□ 0.36
COL9A3-214ENST00000490398 HIST1H2AGP0C0S8 130 aaPredicted RBP17.27■□□□□ 0.36
COL9A3-214ENST00000490398 HIST1H2ADP20671 130 aa17.27■□□□□ 0.36
COL9A3-214ENST00000490398 GP5P40197 560 aa17.27■□□□□ 0.36
COL9A3-214ENST00000490398 FOLR3P41439 243 aa17.27■□□□□ 0.36
COL9A3-214ENST00000490398 MEF2AQ02078 507 aaPredicted RBP17.27■□□□□ 0.36
COL9A3-214ENST00000490398 NAA25Q14CX7 972 aa17.27■□□□□ 0.36
COL9A3-214ENST00000490398 FAM214AQ32MH5 1076 aa17.27■□□□□ 0.36
COL9A3-214ENST00000490398 LCTLQ6UWM7 567 aa17.27■□□□□ 0.36
COL9A3-214ENST00000490398 NKAPQ8N5F7 415 aaKnown RBP17.27■□□□□ 0.36
COL9A3-214ENST00000490398 FBXL8Q96CD0 374 aa17.27■□□□□ 0.36
COL9A3-214ENST00000490398 CABS1Q96KC9 395 aa17.27■□□□□ 0.36
COL9A3-214ENST00000490398 HIST1H2AHQ96KK5 128 aa17.27■□□□□ 0.36
COL9A3-214ENST00000490398 GPR22Q99680 433 aa17.27■□□□□ 0.36
COL9A3-214ENST00000490398 CPNE1Q99829 537 aa17.27■□□□□ 0.36
COL9A3-214ENST00000490398 HIST1H2AJQ99878 128 aa17.27■□□□□ 0.36
COL9A3-214ENST00000490398 C17orf62Q9BQA9 187 aa17.27■□□□□ 0.36
COL9A3-214ENST00000490398 H2AFJQ9BTM1 129 aa17.27■□□□□ 0.36
COL9A3-214ENST00000490398 SPNS1Q9H2V7 528 aa17.27■□□□□ 0.36
COL9A3-214ENST00000490398 TMEM184CQ9NVA4 438 aa17.27■□□□□ 0.36
COL9A3-214ENST00000490398 PADI2Q9Y2J8 665 aa17.27■□□□□ 0.36
COL9A3-214ENST00000490398 CTAGE15A4D2H0 777 aa17.26■□□□□ 0.35
COL9A3-214ENST00000490398 SUV39H1O43463 412 aa17.26■□□□□ 0.35
COL9A3-214ENST00000490398 SLC28A2O43868 658 aa17.26■□□□□ 0.35
COL9A3-214ENST00000490398 ENO2P09104 434 aaPredicted RBP17.26■□□□□ 0.35
COL9A3-214ENST00000490398 GSTA2P09210 222 aa17.26■□□□□ 0.35
COL9A3-214ENST00000490398 ECHS1P30084 290 aa17.26■□□□□ 0.35
COL9A3-214ENST00000490398 BCL6P41182 706 aa17.26■□□□□ 0.35
COL9A3-214ENST00000490398 AP1S2P56377 157 aa17.26■□□□□ 0.35
COL9A3-214ENST00000490398 POU4F1Q01851 419 aa17.26■□□□□ 0.35
COL9A3-214ENST00000490398 USP10Q14694 798 aaKnown RBP17.26■□□□□ 0.35
COL9A3-214ENST00000490398 SSPNQ14714 243 aa17.26■□□□□ 0.35
COL9A3-214ENST00000490398 CATSPEREQ5SY80 951 aa17.26■□□□□ 0.35
COL9A3-214ENST00000490398 PRSS41Q7RTY9 318 aa17.26■□□□□ 0.35
COL9A3-214ENST00000490398 PRICKLE2Q7Z3G6 844 aa17.26■□□□□ 0.35
COL9A3-214ENST00000490398 CTAGE6Q86UF2 777 aa17.26■□□□□ 0.35
COL9A3-214ENST00000490398 C17orf64Q86WR6 236 aa17.26■□□□□ 0.35
COL9A3-214ENST00000490398 CDKL2Q92772 493 aa17.26■□□□□ 0.35
COL9A3-214ENST00000490398 FKBP10Q96AY3 582 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms